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Detailed information on CNT30655389


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197509Rosa chinensisPisum sativum23.5415.5591.24354reverse complement
CNT30574574Rosa chinensisVitis vinifera27.6612.3692.79416reverse complement

Expression of CNT30655389

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRGRLSCGSNCELILLIQTKLDHLTGGFRRSF*

>peptide 2 (31 aa)
MMKQDLIWICLQMMMMSTPGSKSLTKGNSLD*

>peptide 3 (30 aa)
MLLVQPKRRASEGQNGISYVVYRIGSEALY*

>peptide 4 (34 aa)
MGVLGRDLKVLQRVAEPSALRGEGLLASSGPCEA*

>peptide 5 (43 aa)
MNGSGRFPRLSLFGEWLQSQASDWMSGGLRKHMRDKQVFQETV*

Sequence

>CNT30655389
GGCTGCGGTGAGAATGAGGATCACTTCGGAACTCTAGGGGAATGGGCGTTTTAGGGCGGGATCTAAAAGTTCTCCAACGTGTTGCGGAGCCTTCGGCCCT
GAGAGGAGAGGGTCTTTTGGCTTCTTCAGGGCCGTGTGAAGCTTAGCTTGCTTTAGCAGCCACGTGATGATTCAAGTTCGTGGTAGGCGTAGGAGCTGGG
CGAAGCGGTAGCGAAGCTCAGGTGATGACGCAAGTGCGCGGTGAGCGTAGTAGCCCCCTCGGGCATGCTCCTTGTACAACCCAAGCGAAGAGCTAGTGAG
GGCCAGAATGGAATATCGTATGTAGTGTATAGAATCGGATCTGAAGCTCTTTACTAGGATTAGAACAAGCGAGGAACGAGTGATCACAAGCTCCGCTTAA
GCGCTCGACATGCAGTTAGCTCAAAACGTGTTCATCATGTGGCCGAGTGAAGCGCACCTGTGTGAAGCAGCCTAGCATCACTTTAGATATGAGCAGAATG
GATGACTTACAACTGAAAGTAAGTTCTTCGGATCGTACGACGTAATGGAGATCTTGGTCTAGATCCGGTGGTTCGCAGAATTCGGGACCTAACGATGCTC
GGTTCGTCACATGAACGGGAGCGGACGATTCCCTCGTCTCTCCCTTTTCGGGGAATGGCTGCAATCACAAGCAAGTGATTGGATGAGTGGGGGGCTCCGA
AAGCACATGCGGGATAAGCAGGTGTTTCAGGAGACGGTCTAAAAATGGGTCCGGTCTAGAATGAAAAGAGAACTCTAAACAAGCTGGAACTAATCAAGAT
CAATAGGAAGGCTAGGAATTTTTTGACAAATTGAGAAAGTTTTTTTTATTCTCCAACTCGCGCCTTTTTTGAAGACTTTTTGTGGGTGGCGGCCTTGATT
TGGTGCCCCTACAAGATCCCCGGTAACCTCGGGCTCGGGGGCCTTTGCCTTCATTTCTTGAAGAGCACGAGGTCACCTCTTCATCAATAGAAAGGAACGC
CCGAAAAAAAGTTGTGAACTCCTCCAAGAAACAATAGCGGTAAGTGATGAGGGGACGGCTTTCTTGTGGTAGTAATTGCGAATTAATTCTATTAATTCAG
ACTAAACTCGATCACTTGACAGGGGGGTTTAGGAGGTCTTTTTGAGCGCATTTATCTCATATCGATAAAGCGGGTTTCGTCTTATTTTCCGGAAAGCCAG
TTATACTATTCCACTTTAGCTAAGCTAATGATGAAACAGGATCTGATCTGGATTTGTCTGCAGATGATGATGATGTCCACTCCTGGCTCAAAGAGCTTAA
CGAAAGGGAACTCTCTAGATTAAGAAAGAATTTCCTTCGTAATTAAGCAGCATCCGTTAAGTGAGTAGGGGTGCGCCGGACCGTCGACGAATAATAGGTA
CCCCCACCCCAGGCAGAGTTAGTGAGCCGTGTAATAGGCGACCATTTCGCGCGGTTCGGGGGGCACTTGAGTCAGCCGCCGCCCGACTGCGTCTTGACCC
CTAT