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Detailed information on CNT30655385


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Rosa chinensisSetaria viridis14.5237.0598.25342reverse complement
CNT30524653Rosa chinensisSetaria italica13.6726.8898.76322forward
CNT30378671Rosa chinensisArabidopsis thaliana6.4153.5598.68151reverse complement
CNT30632593Rosa chinensisVigna unguiculata46.8465.3498.011103forward
CNT30504976Rosa chinensisNicotiana attenuata17.273.7798.77405reverse complement
CNT30635645Rosa chinensisCapsicum annuum21.3681.2692.84503forward
CNT3098505Rosa chinensisSolanum tuberosum19.9647.9195.53470reverse complement
CNT30569652Rosa chinensisActinidia chinensis13.4653.1998.11317reverse complement
CNT30554921Rosa chinensisOryza glaberrima5.8639.0998.55138forward
CNT30247816Rosa chinensisAvena sativa29.5133.2798.99695forward
CNT3067373Rosa chinensisLeersia perrieri11.8992.7297.86280forward
CNT30203595Rosa chinensisHelianthus annuus47.0960.5396.121109forward
CNT30721611Rosa chinensisTriticum spelta9.5148.5999.55224reverse complement
CNT30366518Rosa chinensisSorghum bicolor5.9943.5282.27141reverse complement
CNT30595506Rosa chinensisOryza meridionalis14.6531.3698.55345reverse complement
CNT30360998Rosa chinensisLactuca sativa12.3110098.62290forward
CNT30420891Rosa chinensisPapaver somniferum25.0521.9792.37590reverse complement
CNT30323793Rosa chinensisAsparagus officinalis7.2253.898.24170forward
CNT30151602Rosa chinensisBrachypodium distachyon7.7736.5398.36183reverse complement
CNT30104648Rosa chinensisOryza rufipogon19.7579.7697.63465reverse complement
CNT30495774Rosa chinensisDigitaria exilis16.6999.2498.98393reverse complement
CNT3040451Rosa chinensisMarchantia polymorpha7.6930.8394.48181forward

Expression of CNT30655385

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLSKPIHLSETEESGISCVGVKSEDLRRKAKSEGSSLGPYRRWSAKAWGANGIRYPGSPCRKR*

>peptide 2 (72 aa)
MKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPTITHDFCVTLVTQRLLVVLLAHTTVGSSTGVKS*

>peptide 3 (50 aa)
MWFNSIQRAKPYQPLTYEQQNLSLTGWYLLSYRCCMAVVSSCREMFGQVL*

>peptide 4 (60 aa)
MPRQSFFTALLHPNQSLSIIRSIPIPSSSRAQENVIRDDQWPRCSLVRPVHPCVNAHSIR*

>peptide 5 (75 aa)
AFGASFILSFHRPVLTGKRRTLRNRLLLGANELPTKHIFACRGKVFSRLSCIRTSRYPSFGPFLFLLLPALKKMS*

>peptide 6 (47 aa)
MTSSPHGPYGLGHTRATMAITMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 7 (47 aa)
MSCQQSIYLHAEAKFFHGSLASEPVAIHHSVHSYSFFFPRSRKCHKR*

>peptide 8 (38 aa)
MKNHKRRKKRKNKKGKEVVRPVHQVLPLQGPIIVKKRV*

>peptide 9 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 10 (39 aa)
MQVERCFRARLSRLENKVANGCVTRGNLPNSSGPNPEES*

Sequence

>CNT30655385
CGCCTTTGGCGCCTCCTTCATCCTTTCTTTCCATCGGCCGGTCCTGACCGGGAAGCGGCGAACCCTTAGAAATCGACTCCTACTGGGAGCTAATGAGCTG
CCAACAAAGCATATATTTGCATGCCGAGGCAAAGTTTTTTCACGGCTCTCTTGCATCCGAACCAGTCGCTATCCATCATTCGGTCCATTCCTATTCCTTC
TTCTTCCCGCGCTCAAGAAAATGTCATAAGAGATGATCAATGGCCGCGTTGTAGTCTCGTTCGCCCGGTCCATCCGTGTGTAAACGCTCACTCTATAAGA
TAAGTAGAACAATCCACTTAGACTTTCTTTGAGAGTATGAAAAATCATAAGAGAAGGAAAAAAAGAAAAAATAAAAAAGGAAAGGAAGTAGTACGCCCGG
TTCACCAGGTTCTACCACTGCAGGGCCCAATCATAGTTAAAAAAAGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTC
GAACGTTGTTTTCGGGCGCGCTTGTCTCGCCTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCCAAATCCTG
AAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTACGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG
ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCG
CGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCA
GCCGCGGTAAGACGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGG
TGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGAAGATCTACGAAGGAAGGCCAAAAGC
GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGT
TCGCCCTTGGTCTATGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGG
CCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAACGGGATGG
TACTTACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTG
AGACATGCGCCTAAGGAGAAAGTCTTTGCAACCGAAGTGAGCCGAGGAGCCGAGTGACGTGCCAGCGCTACTAATTGAGTGCCAGCACGTAGCTGTGCTG
TCAGTAAGAAGGGAGCCGGCGCCTTTCTCGCTTGTTTAGTAAAGTCGCCCAGGTGACGACGACGTGCGGAGAAAGACTCGGCATTCAGGCGAGCCTGTGG
TACGTAGTGAGTTTACGCTCCGAAACAAAGAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAG
TCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCA
GTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACAC
CGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAACGATCACCCATGACTTCTGTGTAACACTAGTGACACAAAGGCTTTTGGTGGTC
TTATTGGCGCATACCACGGTGGGGTCTTCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCTTTAGCCTTTCGCA
CTAAGCAAGTAAACAAACTACCTTAGCGCTTCACACTAAGCAAGTAAACTCCCTTCTTGTTCATCAATCGGAAATCAAGACAAACCGGGCACTACGGTGA
GACGTGAAAAGACCCGATCCCATTCCGACCTCGATATGTGGAATCGTCTTGCGCC