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Detailed information on CNT30655381


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBU3|PSBA_LOTJA, E-value = 1e-79

BLAST vs NONCODE:
NONMTRT000175, E-value = 5e-173

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Rosa chinensisOryza sativa73.0830.9392.84391forward
CNT30530127Rosa chinensisEucalyptus grandis19.2532.2991.26103forward
CNT30378684Rosa chinensisArabidopsis thaliana64.4933.9693.33345forward
CNT3021612Rosa chinensisCitrullus lanatus18.548.7798.9999forward
CNT30196112Rosa chinensisPisum sativum27.131.3297.24145forward
CNT3095573Rosa chinensisSolanum tuberosum15.1420.0590.1281forward
CNT30300827Rosa chinensisTriticum aestivum73.0834.3993.35391forward
CNT30391503Rosa chinensisTriticum turgidum21.8723.493.16117forward
CNT3089382Rosa chinensisVigna radiata47.2955.4890.91253forward
CNT30540531Rosa chinensisBrassica napus73.8320.3993.92395forward
CNT30555706Rosa chinensisOryza glaberrima46.5436.3592.77249forward
CNT30145113Rosa chinensisMedicago truncatula36.0758.8492.75193forward
CNT30441777Rosa chinensisAegilops tauschii6057.0291.9321forward
CNT3059907Rosa chinensisArabidopsis lyrata29.1630.6591.67156forward
CNT3018289Rosa chinensisZea mays73.2715.1191.84392forward
CNT30606924Rosa chinensisGossypium raimondii22.814.9194.26122forward
CNT3067750Rosa chinensisLeersia perrieri43.1886.5288.74231forward
CNT30627894Rosa chinensisDaucus carota10052.4594.77535forward
CNT30685372Rosa chinensisTriticum urartu102.9960.0990.38551forward
CNT30360309Rosa chinensisLactuca sativa59.2555.1397.79317forward
CNT30484609Rosa chinensisChara braunii32.1543.7781.98172forward
CNT3058324Rosa chinensisAmborella trichopoda73.6457.189.09394forward
CNT30147990Rosa chinensisBrachypodium distachyon73.0825.8392.33391forward
CNT30102095Rosa chinensisOryza rufipogon9.3521.379250forward
CNT3049694Rosa chinensisCucumis sativus22.0639.7389.83118forward

Expression of CNT30655381

Peptides detected in this lncRNA

>peptide 1 (56 aa)
RIVETSILEDQSAKITMSGYDIISFFLLTESVTFISRFIFCGFPDQTRGIPSEKLP*

Sequence

>CNT30655381
GAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACC
TTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAG
TAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACC
AAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCGTTGTATAACCATTCATCAACGGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATA
GCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTG
CAGCAATGAAAGCAATAATAAATACAGAAGTTGCG