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Detailed information on CNT30655370


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A360|CLPP_COFAR, E-value = 1e-78

BLAST vs NONCODE:
NONCSAT000277, E-value = 2e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268958Rosa chinensisChenopodium quinoa44.0269.589.13515forward
CNT3045660Rosa chinensisPrunus dulcis23.3365.1697.8273forward
CNT3060029Rosa chinensisArabidopsis lyrata33.7629.5989.37395forward
CNT3083483Rosa chinensisBrassica juncea27.2674.8888.4319forward
CNT30598582Rosa chinensisFraxinus excelsior26.1593.2993.46306forward
CNT30218200Rosa chinensisKalanchoe fedtschenkoi36.5838.0489.49428forward
CNT30154187Rosa chinensisPrunus persica59.2384.3193.8693forward

Expression of CNT30655370

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MIGSIRLGLVNDPITILPFVVVQKYYKNTMMVPLLYIFISSVI*

>peptide 2 (43 aa)
PLCINPCDGFAQLQQLFRFQDKFSRLCLVKRTSRLMDHYPDNI*

Sequence

>CNT30655370
TCCTTTGTGCATAAACCCTTGTGATGGTTTCGCGCAGCTTCAGCAGCTCTTCCGCTTCCAGGACAAATTCTCCCGTCTGTGCCTCGTAAAAAGAACTAGC
AGGTTGATGGATCATTACCCTGATAATATATGATATAACATAAAAAATGTTTCTTCTATCTCGCATGATGAAAGTGAGGAGATAAAGAATAATCAAAAAG
ATATAATTGAACAACCGTACAGGCATCTTTTGCGCATTGCATACGGCTCTATAATGGAATTCGCTTTTTTTACCTTACCTTACTTACATCGAAGAAATAG
AAAATAAATGATAGGGTCTATCAGACTCGGGTTGGTAAATGATCCAATAACCATCCTTCCTTTTGTAGTAGTTCAAAAATACTATAAAAATACTATGATG
GTTCCGTTGCTTTATATATTTATTTCATCTGTTATTTAGCAATCCCAAAGTTTCTTTTTTTTTTTTTTCAAATAAAAAACAAGATTTATTTTCATATTCT
TTCATAACCTAAAAATTGTTAAGATTAAGAGCCCCTGCTGTGAAAACAAAAAAGTTTGTGACGCTGAAATAGGCCTCCCGATAGATTGGCTAAAATCGAA
AATGCCTTTTTATCTCATACTACTCTTTCGATACGTAATCTAAGGTTTAAAAAAAATTTCTCATATCGAATTCGAAGTGCCATGCTATTATTACTTAATA
TTCATATAGTGCGAAGGCATAGTTTTCTTTTTTTCTCTCAAATCAAATAAAAAACTCATTGGCGCCGAGCGTGAGGGAATGCTAGACGTTTGGTAATTTC
CCCTCCAACAAGAATAAAAGATCCCATCGAAGCGGCTAATCCCATGCATATTGTCTGTATATCTGGTCGCACAAATTGCATAGTATCATAAATAGCTACT
CCGGGTATTACCCATCCGCCAGGAGAGTTTATAAACAAATACAGATCTTTGGTATCATCCTCTATGCTGAGATATACCATAAGACCAATAAGTTGATTCG
AGATCTCGCTATCAACCCCTTGGCCTAAAAAAAGTAATCTTTCTCGATAAAGTCGGTTGTATACGTCAATCCACAATGCATCTTCCTCTCCAGGACTTCG
AAAAGGTACTCTTGGAACACCAATAGGCATTAAATAAAAGAAAAATTAAGTACTATATCTCACTTTGATG