Detailed information on CNT30655297


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRW9|CSLD5_ARATH, E-value = 5e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677502Rosa chinensisSetaria viridis15.5525.687.2186forward
CNT30499723Rosa chinensisCoffea canephora29.1130.2680.75161forward
CNT30270249Rosa chinensisChenopodium quinoa28.577.981.65158forward
CNT30381526Rosa chinensisManihot esculenta39.4232.8388.07218forward
CNT30287901Rosa chinensisTriticum aestivum11.2123.490.3262forward
CNT30224742Rosa chinensisHordeum vulgare13.9232.9189.6177forward
CNT30314318Rosa chinensisCamelina sativa16.6430.0786.9692forward
CNT30346665Rosa chinensisEragrostis tef29.1145.8780.75161forward
CNT3022600Rosa chinensisPopulus trichocarpa29.4814.1780.98163forward
CNT30102429Rosa chinensisOryza rufipogon23.6918.4282.44131forward

Expression of CNT30655297

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGADPLNAGLSGIQYMDLHPWQCILKPVRISSVTEP*

>peptide 2 (39 aa)
MVAACCRTIEFEFECDVNYNPIHIPPGQGHPTWPRMDQF*

Sequence

>CNT30655297
GTTTGCAGACCCAGCACTGATCACACCAAATCTTTTCTAGTGTAGTTTGTATCATTCAGACATCAATTATACCGTGATTGAGGCTATGGTTGCGGCCTGC
TGCCGAACGATTGAATTTGAATTTGAGTGTGATGTTAATTACAATCCAATCCACATTCCTCCAGGACAGGGCCATCCGACTTGGCCAAGAATGGATCAAT
TCTGACCCATAAAAGGGAGAAGATGGAAGCCAGCAATATTGACCACACAATAATGATGGTAGGAGTCCTGTTCTGCCTACCAAGCAGACCCTTGAGGAAA
GGATAGAGATGAACAATCACCCAGAAGGCAAAGAAGAGCTTACCAAACAGAGGGCAATGCCTGCTCAAAAATATTTCAATTGACCCAAGGGCCCATCGAA
GGACTTGGTGCAAACGATCAGAAAGGTTAATGGGGGCAGATCCTTTAAATGCAGGTCTGTCAGGGATACAGTATATGGATCTCCACCCATGGCAATGCAT
CTTAAAGCCTGTCAGAATATCCTCTGTAACTGAGCCATAAATCCAGCCAACCT