Detailed information on CNT30655256


BLAST search results

BLAST vs Swiss-Prot:
sp|P32295|ARG7_VIGRR, E-value = 8e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381298Rosa chinensisManihot esculenta5.2727.2184.3483forward

Expression of CNT30655256

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLNTGLFILTQQRVLKCGWFGIPGSNQKHSFTHLSGK*

>peptide 2 (29 aa)
MISIFPSEGGRILRTLKKEKAVMLSKEKV*

>peptide 3 (36 aa)
MAVVGGKSGREIKEYMVCHVLHVDFAYASVPKSMVL*

>peptide 4 (39 aa)
MWMVWDPRFKSEAFIHTLKREVRSRMVSSLQGMVIPPIG*

>peptide 5 (78 aa)
MSFTLILHMLVFQNLWFCRNIYPYLLYIYNNGLINWCSFTDRNFWCCYNSFTMGPEHKGLSICFPVSFMIHSSIVSPS*

>peptide 6 (29 aa)
MGLSSYSSSSSLKDISHAKDTKLYPYVDT*

Sequence

>CNT30655256
TGTGTATGTCTTGCCATTGATGTAGTCTACTGTAGAAACATCCTTCCCTACCTCATTGCACGAGAGACACGGAGTGGACCTTCATAAGTGGAATTTCTAT
ATAAGAAAATAACTTCAGATGTGGATTTCTACCCAGCACTGATAATTGCAGTTGCTCTACAGACAAGAATATGTGGTACTATATTAACAGTTCTATATGT
GGTCAGATATAAATGATGCTATGTACTGGGAACAAGAAAGCTAGGTTAGCATGTGGCTTTGTTGTTTCATCTATGTCTCCAGTGTCAACAAGCTGAGGAA
GTGTTTCAATTTTTGATCTGTCTAGAAAATTAAAGAGACTGCCAACCATGACCAGAAAACCCAACAGACAACATCAGACTTGCAGAAGTATCCCCTCAAC
AGAAGATATGAGTCTATACCATTGATGCTCAACACTGGCCTCTTTATCTTGACTCAGCAGCGTGTTCTGAAATGTGGATGGTTTGGGATCCCAGGTTCAA
ATCAGAAGCATTCATTCACACACTTAAGCGGGAAGTAAGGTCAAGGATGGTGTCTTCACTGCAAGGAATGGTGATACCGCCCATTGGATGATTGTATCCA
GATTCTTCTTCAGCTTGACTCAACAAATCCAGAAATAAAGGCTGGTTCAGAAAAGTGATTGGAATCACAAATCGCTTCTTCTGACTCTCTCCCACATATA
CTGCGAAAAAGCCTTTTGGGGTTGAAGTTGTTTTAGCAATTCCAGGAAAGCGGAAACCCATGATTTCTATATTCCCAAGTGAAGGAGGAAGAATTTTAAG
GACTTTAAAAAAAGAGAAAGCTGTGATGCTTAGCAAGGAGAAGGTTTGAGTTGCTCATGAACCTGACCATGCCTGTGTATATATAGCTGTTAGGGTGCGT
GGAAACTCATCTTGTACATGAATGATTGGTGAAGAGGCACTGAGGTAGGGAAACTAGGTTGTGAGAAACCACATGGGTTTGTCTTCCTACTCAAGTTCTT
CATCCCTCAAGGACATTTCACATGCAAAGGATACCAAACTGTATCCCTATGTTGATACATGATTCCCTACATTAAATGAATTAAGAATCTCCATCAGTTA
TTTGATATATGAAATGAGTGGTGAAGATGGCAGTAGTTGGGGGCAAAAGTGGGCGAGAAATCAAGGAATACATGGTTTGTCATGTCCTTCACGTTGATTT
TGCATATGCTAGTGTTCCAAAATCTATGGTTTTGTAGAAACATCTATCCCTACCTCCTTTACATATATAACAACGGGCTCATTAACTGGTGTTCCTTCAC
AGACAGAAATTTCTGGTGCTGCTATAATAGTTTTACGATGGGTCCGGAACATAAAGGGCTGAGCATCTGCTTTCCTGTGTCATTTATGATCCATTCATCT
ATAGTATCACCAAGCTAAGGAGGTCTGTCATTTTACTTGGTCAAATCTATAATATTCACTTGGTCAAGCTTGACAAGAAGACCGTACCAAATTCATTTCT
TAATCTACTAGAATTAGATATAGAAGAATTGGATTATTTGGTTTAGGATTATTGGTCTCAATAACCCTTTTCAT