Detailed information on CNT30654253


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538870Rosa chinensisBrassica napus26.9230.9381.75137forward
CNT30613838Rosa chinensisArabis alpina25.7436.880.92131forward

Expression of CNT30654253

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MMRFKLQSLTLQQNHLHVTQHKRISETAWAYHGNHLFCQAQPPWHLQ*

>peptide 2 (48 aa)
CVSKMFKFIVNKYQTVHFPCSKEYMIRSFHTYILYISQNPIKGTFINS*

>peptide 3 (33 aa)
MFQRIHDSFVPYIYTVYITKSNQRDIYQFVVLV*

>peptide 4 (38 aa)
MAPSIIFGFGFFESLHFQPPLQLYLILFLGIDAPLWCTC

>peptide 5 (38 aa)
MSHNTKEYRRLLGHIMETIFFVRPSHHGTFNNIWVWLF*

Sequence

>CNT30654253
TGCGTGTCAAAGATGTTTAAATTTATTGTCAACAAATATCAAACTGTTCACTTTCCATGTTCCAAAGAATACATGATTCGTTCGTTCCATACATATATAC
TGTATATATCACAAAATCCAATCAAAGGGACATTTATCAATTCGTAGTGCTAGTTTGAGTCACCCTGATTCGGCCCCAGCCCAGTAATCTCTTCAAAATC
TGTCCATTGCTTCTTTCCTTACCACCATCTGTTGAGATCTTCATGTTACCCAGTTACTGTTTATGATGAGATTTAAGCTCCAAAGTCTAACACTGCAGCA
AAATCATCTACATGTCACACAACACAAAAGAATATCGGAGACTGCTTGGGCATATCATGGAAACCATCTTTTTTGTCAGGCCCAGCCACCATGGCACCTT
CAATAATATTTGGGTTTGGCTTTTTTGAGTCCCTCCATTTCCAACCCCCTTTGCAATTGTATTTGATCTTATTCTTGGGAATCGATGCACCTCTATGGTG
CACTTGTTT