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Detailed information on CNT30653881


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 7e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Rosa chinensisSetaria italica32.1245.7381.34343forward
CNT30530404Rosa chinensisEucalyptus grandis32.5898.0385.34348forward
CNT30316147Rosa chinensisCorylus avellana42.1360.485.56450forward
CNT30703138Rosa chinensisQuercus lobata37.7376.9184.62403forward
CNT30499549Rosa chinensisCoffea canephora31.7469.1883.19339forward
CNT30615836Rosa chinensisSesamum indicum11.732.6480.8125forward
CNT3021247Rosa chinensisCitrullus lanatus38.7644.9580.19414forward
CNT30729539Rosa chinensisCorchorus capsularis38.260.7182.6408forward
CNT3068683Rosa chinensisQuercus suber37.8382.1184.41404forward
CNT30524728Rosa chinensisPhaseolus vulgaris31.6562.5984.91338forward
CNT30486152Rosa chinensisOlea europaea26.0330.7282.01278forward
CNT30506399Rosa chinensisNicotiana attenuata16.2952.5779.89174forward
CNT30182233Rosa chinensisSecale cereale25.0943.0982.46268forward
CNT30289293Rosa chinensisTriticum aestivum19.0166.7882.27203forward
CNT30223417Rosa chinensisHordeum vulgare19.5792.0786.12209forward
CNT30590847Rosa chinensisMusa acuminata20.7948.5878.83222forward
CNT3084565Rosa chinensisVigna radiata31.652085.5338forward
CNT30539234Rosa chinensisBrassica napus37.2743.579.4398forward
CNT30508626Rosa chinensisSolanum lycopersicum7.2122.7884.4277forward
CNT30143836Rosa chinensisMedicago truncatula29.453.8680.89314forward
CNT30244810Rosa chinensisAvena sativa25.0933.1780.22268forward
CNT30261302Rosa chinensisBrassica rapa37.9278.3479.26405forward
CNT30457014Rosa chinensisSaccharum spontaneum25.0935.0882.84268forward
CNT30131528Rosa chinensisLolium perenne23.7855.185.04254forward
CNT3066796Rosa chinensisLeersia perrieri19.0152.1981.28203forward
CNT30718631Rosa chinensisMalus domestica golden36.3367.680.93388forward
CNT30341852Rosa chinensisEragrostis tef42.2332.6383.59451forward
CNT30477892Rosa chinensisArabidopsis halleri31.5531.582.79337forward
CNT30363710Rosa chinensisSorghum bicolor19.5735.680.86209forward
CNT30595456Rosa chinensisOryza meridionalis25.0947.0281.34268forward
CNT30359656Rosa chinensisLactuca sativa31.7420.0680.53339forward
CNT30425316Rosa chinensisPapaver somniferum16.235.8980.35173forward
CNT30570592Rosa chinensisVitis vinifera19.8565.6386.32212forward
CNT30645151Rosa chinensisCannabis sativa19.2921.6283.01206forward
CNT3055709Rosa chinensisAmborella trichopoda18.4530.1282.23197forward
CNT30105598Rosa chinensisOryza longistaminata37.4558.0681.5400forward
CNT30319856Rosa chinensisAsparagus officinalis7.327.8688.4678forward
CNT30574680Rosa chinensisOryza barthii34.5540.2880.49369forward
CNT30583952Rosa chinensisEchinochloa crusgalli25.5659.8782.05273forward
CNT30497454Rosa chinensisDigitaria exilis21.9162.983.76234forward
CNT30115589Rosa chinensisOryza nivara34.5525.8680.49369forward
CNT30594668Rosa chinensisEragrostis curvula16.7653.1282.12179forward
CNT30603506Rosa chinensisOryza punctata34.4673.3181.52368forward
CNT30174824Rosa chinensisVigna angularis37.5542.2179.8401forward
CNT30550386Rosa chinensisOryza brachyantha13.1150.9186.43140forward
CNT30337932Rosa chinensisCynara cardunculus31.3740.8580335forward
CNT30726386Rosa chinensisLupinus angustifolius20.6924.5880.54221forward
CNT3064271Rosa chinensisSelaginella moellendorffii23.7846.1879.53254forward
CNT3050773Rosa chinensisCucumis sativus16.8532.0383.89180forward

Expression of CNT30653881

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MKKKKTLSQTSTTRRELSRGGAGSLSRFTRLVLNASAPSAVVFKQ*

>peptide 2 (33 aa)
MAMPTRMKIRRCSRSRYPIGRVTDAHGFGRFGE*

>peptide 3 (35 aa)
MRRSTRWDPTNPAPPVTTIRRPLRFRPSGTFPPEL*

>peptide 4 (32 aa)
MPLLRPLWYLSSEVVGNKAEFPFELRKGHFSF*

>peptide 5 (86 aa)
TDGIDVSPVGLDLRVLQRIAVDLAGAGQQEPSSDPLRQPQHVESSDHIGYDSLDGIELVMDRRGGAGEMVDLVDFEEERLDDVVSD*

>peptide 6 (96 aa)
MVLNVLLPSGEEIVDDDHAVAALHEAVDEVGPDEPSAAGDDDPEALALQAQRDLPAGIVIGQPEPALVGGFVGEVGGLEVELDEVEWDRDDGRRVK*

>peptide 7 (52 aa)
MGFGGKCKENEEEEDAESDEYNSPRTQSWRCRVSLSLHSFGSECLCSVRCGI*

Sequence

>CNT30653881
CACCGATGGGATTGACGTTTCCCCAGTAGGTCTCGACCTGAGGGTGCTGCAGAGGATCGCCGTAGACCTCGCTGGTGCTGGTCAACAAGAACCGAGCTCC
GACCCGCTTCGCCAGCCCCAGCATGTTGAGAGTTCCGACCACATTGGATATGATAGTCTTGACGGGATTGAACTTGTAATGGACCGGCGAGGCGGGGCAG
GCGAGATGGTAGATCTGGTCGACTTCGAGGAGGAGAGGCTCGACGACGTCGTGTCGGATTAATTCGAATCTAGGGTTCCCAAAATGGTGCTGAACGTTCT
CCTTCCTTCCGGTGAAGAAATTGTCGACGACGATCACGCTGTCGCCGCGCTCCATGAGGCGGTCGACGAGGTGGGACCCGACGAACCCAGCGCCGCCGGT
GACGACGATCCGGAGGCCCTTGCGCTTCAGGCCCAGCGGGACCTTCCCGCCGGAATTGTAATTGGTCAGCCCGAACCGGCGCTCGTAGGTGGGTTTGTGG
GAGAGGTGGGTGGACTCGAAGTCGAACTTGACGAAGTCGAGTGGGATCGAGACGACGGCAGGAGGGTGAAGTAGACGGTGGCGATGGCAATGCCGACGAG
GATGAAAATCAGGCGCTGTTCCCGGAGCAGGTACCCAATCGGGCGGGTCACCGACGCCCACGGCTTCGGGCGTTTCGGCGAGTAGGTGTCGGAAGCGGGC
TGGGCCTCGTCGTGCCCGCCCCGGAATATCAGCTCCGAGCCCATTTAACCGTTTGATTTCAAAAAAACAGACACTTTTGGCTGATGGGTTTTGGAGGAAA
ATGTAAAGAGAATGAAGAAGAAGAAGACGCTGAGTCAGACGAGTACAACTCGCCGAGAACTCAGTCGTGGCGGTGCAGGGTCTCTCTCTCGCTTCACTCG
TTTGGTTCTGAATGCCTCTGCTCCGTCCGCTGTGGTATTTAAGCAGTGAGGTGGTTGGGAACAAGGCAGAGTTTCCCTTTGAATTACGGAAAGGCCATTT
CTCGTTTTGAAAAGTAAACGTGTGTCATTTGGTGTGATTCAAAATCGTTAATAGTTGGTGAATCGGGG