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Detailed information on CNT30653715


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Rosa chinensisOryza sativa23.1621.1985.93135forward
CNT30676770Rosa chinensisSetaria viridis12.0133.189070forward
CNT30524031Rosa chinensisSetaria italica16.334.5588.4295forward
CNT30548370Rosa chinensisIpomoea triloba13.7234.338580forward
CNT30375565Rosa chinensisArabidopsis thaliana9.6122.6787.556forward
CNT3070603Rosa chinensisQuercus suber18.728.6881.65109forward
CNT30632211Rosa chinensisVigna unguiculata17.6733.8884.47103forward
CNT30712585Rosa chinensisGlycine max11.1527.7889.2365forward
CNT30289517Rosa chinensisTriticum aestivum25.2126.5887.07147forward
CNT30221132Rosa chinensisHordeum vulgare8.5821.659050forward
CNT30387764Rosa chinensisTriticum turgidum25.2116.5787.07147forward
CNT30568278Rosa chinensisActinidia chinensis29.8535.2987.93174forward
CNT30586754Rosa chinensisMusa acuminata15.2732.9687.6489forward
CNT3085023Rosa chinensisVigna radiata26.5932.0287.1155forward
CNT30553402Rosa chinensisOryza glaberrima23.1625.8185.93135forward
CNT30145515Rosa chinensisMedicago truncatula15.7837.5584.7892forward
CNT30436608Rosa chinensisAegilops tauschii25.2120.4587.07147forward
CNT30254684Rosa chinensisAvena sativa12.6932.8990.5474forward
CNT30657898Rosa chinensisTriticum dicoccoides25.2120.1187.07147forward
CNT3079298Rosa chinensisBrassica juncea29.164086.47170forward
CNT30465661Rosa chinensisSaccharum spontaneum19.926.7381.03116forward
CNT30131632Rosa chinensisLolium perenne15.4441.183.3390forward
CNT30214941Rosa chinensisHelianthus annuus23.1652.9485.19135forward
CNT30680357Rosa chinensisTriticum urartu19.5540.1485.96114forward
CNT30364641Rosa chinensisSorghum bicolor23.3317.5780.88136forward
CNT30596194Rosa chinensisOryza meridionalis23.1631.0385.19135forward
CNT30370019Rosa chinensisOryza glumipatula23.1626.5785.93135forward
CNT30109688Rosa chinensisOryza longistaminata23.1625.4785.93135forward
CNT30120512Rosa chinensisCitrus clementina10.6320.7487.162forward
CNT3035626Rosa chinensisCucumis melo24.012585140forward
CNT30101372Rosa chinensisOryza rufipogon23.1617.985.93135forward
CNT30576241Rosa chinensisOryza barthii23.1620.3685.93135forward
CNT30116534Rosa chinensisOryza nivara23.1631.2585.93135forward

Expression of CNT30653715

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLVADDGGDGDVEEEQGGDELGYESPVEGPALELVDVEERRRRWVDVVLVVVGLRLLAHFLRHFSTLE*

Sequence

>CNT30653715
GGCACGTGAGAGTCACGCGCGCTCCTCTTGGGGTCGGTGGCTGAGAAGACGGTGTAGACAAGCACAAAGGTGCCGATGATCTCAGCGCCGAGAGCTGTGC
CCTTGCTGTAGCCAGCAGAGACAGAGTTGGTGCCGCCACCGAGGGTCTTGAAGTAGCTACTCTGGAAGGCCTTGACCAGCGCGACACCGGCGATAGCTCC
CAAGCACTGGGCGACCATGTAAGCCAAGGCCCGGATCAGAGAGACCTTACGAGCCAAGAAAAGCCCGAAAGCCGACGCCGTCGCAGGGGCCGGTCTGATG
CTTGTGGCCGATGACGGTGGCGACGGTGACGTAGAGGAAGAGCAGGGTGGCGATGAACTCGGCTATGAGAGCCCTGTAGAAGGACCAGCGCTTGAGCTCG
TCGATGTCGAAGAGCGGCGCCGGCGGTGGGTCGACGTAGTCCTTGTGGTGGTGGGCTTGCGGCTCCTCGCTCACTTCCTTCGTCATTTTTCAACACTCGA
ATAGTTTGGTTCACCTCGCTCTTGAGTTTTGAGTAGAGAGAGCTCTCTGGTTTTGCTGTGAGAATATTAGAGAAATGTGAGTG