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Detailed information on CNT30653585


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373658Rosa chinensisArabidopsis thaliana10.8937.7484100forward
CNT30632012Rosa chinensisVigna unguiculata1122.986.14101forward
CNT30155224Rosa chinensisPrunus persica12.6421.3693.1116forward
CNT30705229Rosa chinensisPrunus avium14.3824.3192.42132forward

Expression of CNT30653585

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPSIASLMAFSLLKVTNPNPLDLPVSRSLMI*

>peptide 2 (76 aa)
MREQIRSIPISLRQTDLRFDDLAKRSKGPFEGLVVGGPGEPSDEATELDLGRGHSEKNENPRERIKTQTLRKRVRN*

>peptide 3 (45 aa)
MISPKGAKALSRASLSVAQASPPTKQRNSISAEAIARKTKTLEKE*

Sequence

>CNT30653585
AAAGTCTTAACATTGAATAATTAAAGGCAACAAACAAAACAAAGTAAACAACACAAATTTTGCAAACGAAGAGTCTATACTTCATTTCTCAAACACCAAT
TTTTCTCAGGACTGAGTACATGAAAAGTAACATAGAGTGACCATTTTCATAGATCAAAATTAGAGAACAGAACCGAACCAAACCAAGAGAACACACACAC
ACCATCACCACCATAACCAACGAGATCCAGACCCCACTAACCCTAAACATAACGCAGAGAACAACTAAACCAGTCCCAGAGCAACTAACAAACCCTAACA
GATCTAACTCCTCCAGCTGCCGCCATCAGATCCACGGTCCTGGCCGTTCATGCCTTCGATCGCGTCCCTCATGGCCTTCTCGTTGCTGAAGGTGACGAAT
CCGAATCCCCTAGACCTTCCGGTCTCGCGGTCGTTGATGATCTGAAAACAAACAGACCAAAATCGAATCAGATCTGAGCATAAACACAAATCAGAATAAC
AAAAGGAGATCAAAAAAAAATAATAATAATAATAAAAGGAACCGATCGATCTTCAATCTAGCAAGATGAAGATGAACGTACCCGATTTTGAGATAGTAAA
ACACAAGAATCATAGTGACATATAGTAACAGAGAGAGTAGTATCATAGATCAAGTAACATAGAAACACAGATCACAGAGATGAGAGAACAGATCCGATCC
ATCCCGATCTCTCTGCGACAAACGGACCTTCGATTCGATGATCTCGCCAAAAGGAGCAAAGGCCCTTTCGAGGGCCTCGTTGTCGGTGGCCCAGGCGAGC
CCTCCGACGAAGCAACGGAACTCGATCTCGGCAGAGGCCATAGCGAGAAAAACGAAAACCCTAGAGAAAGAATAAAGACTCAAACTTTGAGGAAGAGAGT
GAGAAACTGAGAGAGCAC