Detailed information on CNT30653577


BLAST search results

BLAST vs Swiss-Prot:
sp|P31853|ATPF2_SPIOL, E-value = 8e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512572Rosa chinensisJuglans regia48.7732.2582.88257forward
CNT30703592Rosa chinensisQuercus lobata24.128.881.1127forward
CNT30617718Rosa chinensisSesamum indicum34.7213.3883.61183forward
CNT30381141Rosa chinensisManihot esculenta39.4739.7782.69208forward
CNT30223111Rosa chinensisHordeum vulgare37.5726.5180.81198forward
CNT30447424Rosa chinensisSaccharum spontaneum44.2120.9980.69233forward
CNT30135603Rosa chinensisLolium perenne24.6713.9582.31130forward
CNT30228651Rosa chinensisAnanas comosus41.3736.9582.11218forward
CNT3037313Rosa chinensisCucumis melo25.0529.9380.3132forward
CNT30579043Rosa chinensisEchinochloa crusgalli37.9526.4281200forward
CNT30725668Rosa chinensisLupinus angustifolius35.6723.0181.38188forward

Expression of CNT30653577

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MIATPCSSSCFTSADVSFTLPSFSLMSASRSSMNLPSGE*

>peptide 2 (68 aa)
QLQKITLTPSIEKPEQNQERILITAIRRSTVIFHLTWTWSPKPYTNIFNSYITYRTLFDSAITEEEPS*

Sequence

>CNT30653577
CAATTACAAAAAATTACACTCACACCCAGTATTGAAAAGCCAGAACAAAATCAAGAAAGAATATTGATTACAGCAATAAGAAGAAGCACAGTAATTTTTC
ATTTAACCTGGACATGGTCCCCAAAACCATACACAAATATATTCAATTCTTACATTACATATAGAACTCTTTTTGACTCTGCTATCACAGAGGAAGAACC
TTCTTGACAATTTGGTCACTGAGATTAGCAATCTGGGCGTCCAAGGACTTCAAGGCCTCCTGCAACTCTGCCTCCACCTTCTTCCTCCCCTCCGCCAGCT
TCACCTCCACCTCCGCCTGCGTCTCCTTCTTCATCTTCGACAGCGCCGCCGATATCTCCGCCCTCGCCGCCCTCATGATCGCCACGCCCTGCTCCTCCAG
CTGCTTCACCTCCGCCGACGTGTCCTTCACGCTCCCCAGCTTCTCCCTGATGTCGGCGTCGCGCTCGTCCATGAACTTACCGAGCGGCGAGTAGTAGATC
TTGTCGAGGGCCACCATGAGGAGGAGG