CANTATAdb - search

Detailed information on CNT30653443

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT000710, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30519036	Rosa chinensis	Juglans regia	99.09	42.17	95.02	1304	forward
CNT30619307	Rosa chinensis	Sesamum indicum	99.39	78.09	92.81	1308	forward
CNT30730400	Rosa chinensis	Corchorus capsularis	99.32	98.57	94.26	1307	reverse complement
CNT30507933	Rosa chinensis	Nicotiana attenuata	98.63	63.85	95.15	1298	forward
CNT30540266	Rosa chinensis	Brassica napus	94.53	64.59	93.89	1244	forward
CNT3075790	Rosa chinensis	Brassica juncea	96.81	97.18	93.96	1274	forward
CNT30217525	Rosa chinensis	Kalanchoe fedtschenkoi	99.47	72.97	90.53	1309	forward
CNT30719706	Rosa chinensis	Malus domestica golden	83.66	95	94.91	1101	forward
CNT30356068	Rosa chinensis	Lactuca sativa	97.8	45.09	90.6	1287	forward
CNT30574507	Rosa chinensis	Vitis vinifera	99.54	72.3	94.43	1310	forward
CNT30176196	Rosa chinensis	Vigna angularis	99.62	87.23	92.45	1311	reverse complement

Expression of CNT30653443

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MRPPSDCRPAVGALGPQRHVSLVKPSQQTSCEGRLELQFLPSGG*

>peptide 2 (55 aa)
MPCHLISDAHEWINEIPTVPVYYPAKPQPREWAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 3 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

Sequence

>CNT30653443
AACAGTCGACTCAGAACTGGTACGGACAAGGGGAATTCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGTTAACGCAATGTGATTTC
TGCCCAGTGCTCTAAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTTGTCAT
CTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAATGGGCTTGGCAGAATCAGC
GGGGAAAGAAGACCTTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGTATAAGTGGGAGCCTTCGAGCGAAAGTGAAATACC
ACTACTTTTAACGTTATTTTACTTATTCTGTGAATCGGAGGCGGGGCACTGCCCCTCTTTTTTGACCCAAAGCCTGCTTCGACGGGCTGATCCGGGCGGA
AGACATTATAAGGTGGGGAGTTTGGTTGGAGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGG
AACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACTAACTGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTTGGAATTTAAGGCTA
GAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTATGGCAGCCAAGCATTCATAGTGACGTTGCTTTTTGATCCTTTGATGTCGGCTCTTCCTATCC
ATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCATGAGACAGGTTAGTTTTACCCTACT
GATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCT
ACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCCGCCGTCCGATTGCCGACCCGCAGTAGGGGCCCT
AGGCCCCCAAAGGCACGTGTCGTTGGTGAAGCCCTCACAGCAGACAAGCTGCGAGGGCCGCCTTGAATTACAATTTCTACCGAGCGGCGGGTAGAATCCT
TTGCAGACGACTTAAATACGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATTCAGCCCTGCGTCGCTTCGATTCGTCC
CTCCCCCTTCCATCCT