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Detailed information on CNT30652979


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-159

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-140

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Rosa chinensisOryza sativa63.0131.6286.67690forward
CNT30513318Rosa chinensisJuglans regia63.3868.1186.6694forward
CNT30630785Rosa chinensisVigna unguiculata61.2878.6687.03671forward
CNT30712823Rosa chinensisGlycine max62.3777.4486.38683forward
CNT30588982Rosa chinensisMusa acuminata57.1772.9686.58626forward
CNT30229481Rosa chinensisAnanas comosus62.4764.2986.4684forward

Expression of CNT30652979

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGMPSLSWILAFTLSMVSELSTSRVMVFPVRVLTKICIPPRRRRTKWRVDSFWML*

>peptide 2 (41 aa)
MVSEDSTSRVIVLPVRVFTKICICNTQNNIRPPFYIKIHHQ*

>peptide 3 (40 aa)
MVSELSTSRVIVFPVRVLTKICIPPRRRSTKWRVDSFWML*

>peptide 4 (33 aa)
NIINRRSKFIYKTKSTIGNKTCPITSTGRQYQT*

Sequence

>CNT30652979
GAAACATAATTAACAGAAGATCCAAATTTATTTATAAAACCAAGAGTACCATAGGAAATAAAACTTGTCCAATTACCTCAACAGGGAGGCAATACCAAAC
ATGAAATTAAAATACTTGCCTCAGCAAGGAAGCAATAAAAGTACCACAAAAGTAAAAACATAAAAGAAAACACTGTCACCAAAGGATCTTCACAGCGGCT
GCCTTGCAATCACCAGACTTCAGAAACCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGCCCATC
CTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTGTCTGAGCTC
TCCACCTCAAGGGTGATTGTCTTCCCTGTGAGGGTCTTGACAAAGATTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGA
TGTTATAGTCTGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGC
CTTCACGTTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTGATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCATACCACCACGCAGACGAAGA
ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCTAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGG
GAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAA
AATTTGCATCTGCAATACACAAAATAACATAAGACCTCCATTCTATATCAAAATCCATCATCAATAACATGTAGACTTATTGAAAAGTAAAAACTATATC
ATACAAAAGGTGAAAAGGTACTACCAATCAAACACAAATCCAACTTCCAAACAACGAATCAATTTTCAAACTTTCCATCCATTTTTTTTTTACCA