« Back to Rosa chinensis search


Detailed information on CNT30652897


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FK62|SAU24_ARATH, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315050Rosa chinensisCorylus avellana25.7832.2983.03165forward
CNT30487885Rosa chinensisOlea europaea22.1910.1284.51142forward
CNT30560987Rosa chinensisActinidia chinensis27.0334.0684.97173forward

Expression of CNT30652897

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCGINEFRIEGDQFRYEVVSQIHFINSFT*

>peptide 2 (30 aa)
MKDGSSMILEPRIVSSGSPQHRLQISFRDI*

>peptide 3 (46 aa)
MSSELRVINFDMKLYLRFTSLIHSLKLDVRSRKVCSLQGMVIPPRG*

>peptide 4 (59 aa)
QNGLLASFDFKNQSPHVGNSFRGLMTCQLSACRNLHLDLLSLLRPSQTTLHKLFPAGPS*

Sequence

>CNT30652897
CAAAATGGCCTTCTTGCTTCATTTGATTTCAAAAATCAGAGTCCTCACGTTGGCAATAGCTTTAGAGGACTCATGACATGCCAGCTTTCTGCTTGTAGAA
ATCTGCATCTTGATCTGCTCAGCTTATTGAGACCTTCACAAACAACATTGCATAAGTTGTTTCCGGCTGGCCCCTCATAGCCTCACCTTCATGTGTGGAA
TCAATGAGTTCAGAATTGAGGGTGATCAATTTCGATATGAAGTTGTATCTCAGATTCACTTCATTAATTCATTCACTTAAGCTTGATGTGAGATCAAGGA
AGGTGTGCTCACTGCAGGGGATGGTGATACCGCCCAGGGGATGATCAAATCCAAATTCTTCTTCTGCTTGCCTCAACAAATCTTGGAATGAAGGATGGTT
CAAGTATGATATTGGAACCACGAATCGTTTCTTCTGGCTCTCCCCAACATAGACTGCAAATATCCTTTAGGGATATCTAATGTCTTTGAACCAGATAGAG
ATCTAGTAAGAGTTTTCTTGGCACTAGCAATTGCTGGTAACCGAAAACCCATGGTTTTTATCTTTCAGGTGGAAATGAAACAAGAAAATGAACCAGAAAG
ACTTATGAAATGAAAGAAAGCTTAATTTGATACTTGGGAA