Detailed information on CNT30652852


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 2e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Rosa chinensisSetaria viridis26.8825.4891.59107forward
CNT30512691Rosa chinensisJuglans regia25.386.2290.1101forward
CNT30587002Rosa chinensisMusa acuminata38.1956.388.16152forward
CNT30511330Rosa chinensisSolanum lycopersicum40.739.7186.42162forward
CNT30555589Rosa chinensisOryza glaberrima49.511.2987.31197forward
CNT30441013Rosa chinensisAegilops tauschii30.6533.9885.25122forward
CNT30624277Rosa chinensisDaucus carota38.4432.1484.97153forward
CNT30721746Rosa chinensisTriticum spelta54.5213.587.1217forward
CNT30367313Rosa chinensisSorghum bicolor26.1318.3191.35104forward
CNT30646445Rosa chinensisCannabis sativa18.8421.7486.6775forward
CNT3054135Rosa chinensisAmborella trichopoda44.222986.36176forward
CNT3024196Rosa chinensisPopulus trichocarpa49.543.3990.86197forward
CNT30322486Rosa chinensisAsparagus officinalis54.5246.2785.25217forward
CNT30150825Rosa chinensisBrachypodium distachyon45.9830.9188.52183forward
CNT30104395Rosa chinensisOryza rufipogon40.732.7987.04162forward
CNT30725946Rosa chinensisLupinus angustifolius24.1245.7194.7996forward

Expression of CNT30652852

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSNMLVVTSSVGMLNWIHSHTTHLRPAVSLHPELVVGFSVLPPPATCPIIARQPLGTI

>peptide 2 (52 aa)
MRPTFCPGGASRLTVLACPICWWLPPPWGCSTGFIATPRTLGQQFLFTLNLW*

Sequence

>CNT30652852
GATAGTCTTGAATAAAAATAAAGAGGTTCTTCCAAAACAGTAAATTTAGTTCAAAAGAAACGGTGGTCTCCTTCCTAATGACACTCATAAGCTTTAGCAT
ATAAATCTTAAGCCTTATCCTTGGAAGCAAAAGCTGCAGCCTGTCCTCTGAGTCTACCAGTTCTCCTGGCAGCAATGAGACCAACCTTCTGCCCAGGGGG
AGCATCACGCCTGACTGTGCTAGCATGTCCAATATGCTGGTGGTTACCTCCTCCGTGGGGATGCTCAACTGGATTCATAGCCACACCACGCACCTTAGGC
CAGCAGTTTCTCTTCACCCTGAACTTGTGGTAGGCTTCTCTGTTCTTCCACCACCTGCAACCTGCCCAATCATAGCACGGCAGCCACTTGGAACAATC