Detailed information on CNT30652592


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30244606Rosa chinensisAvena sativa15.0120.7491.0756forward
CNT30445180Rosa chinensisSaccharum spontaneum15.0125.2392.8656reverse complement
CNT30604390Rosa chinensisOryza punctata15.0122.7694.6456forward

Expression of CNT30652592

Peptides detected in this lncRNA

>peptide 1 (32 aa)
NFLVWKQTKVNQQARHKLRYGLNQTRLSDSLI*

>peptide 2 (39 aa)
MSTESDAQVPEMSCISSLISNSELMGRKVSQHHEVLHKN*

>peptide 3 (29 aa)
MKFYIKTNKISKQIFHISLKSPTKDSSIR*

>peptide 4 (29 aa)
KLSSLETDQSKSASKAQTQIWVKPNEVIR*

Sequence

>CNT30652592
AAACTTTCTAGTTTGGAAACAGACCAAAGTAAATCAGCAAGCAAGGCACAAACTCAGATATGGGTTAAACCAAACGAGGTTATCAGATAGTTTAATCTAG
AGATACTGGTGCTGATGAGCACTGAATCAGATGCACAAGTACCAGAGATGAGCTGTATTTCAAGTCTAATTTCAAATTCTGAATTGATGGGCAGAAAAGT
GTCACAACACCATGAAGTTTTACATAAAAACTAATAAAATCTCAAAACAAATCTTCCATATTAGCTTAAAGTCTCCAACAAAGGACAGCAGCATAAGATA
AAAACCAAAAACACTCCATTTAGAAAAGCGATGTTCCCTTTCCCTTCTTGTCTCCACCAATCTCAAAGTGCTT