Detailed information on CNT30652116


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 7e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315005Rosa chinensisCorylus avellana20.127.5689.63135forward
CNT30701990Rosa chinensisQuercus lobata20.1223.1285.93135forward
CNT3071936Rosa chinensisQuercus suber14.6140.6687.7698forward
CNT3047926Rosa chinensisPrunus dulcis18.9345.8583.46127reverse complement
CNT30171034Rosa chinensisTrifolium pratense20.4221.0481.75137forward
CNT30143980Rosa chinensisMedicago truncatula23.9941.1880.75161forward
CNT30126439Rosa chinensisCorymbia citriodora18.3329.7885.37123forward
CNT3024160Rosa chinensisPopulus trichocarpa19.0827.2381.25128forward

Expression of CNT30652116

Peptides detected in this lncRNA

>peptide 1 (29 aa)
EPNKSYFSYFETLYLHIKTAIKVRFVFIH*

>peptide 2 (32 aa)
MFLCYQFIEKFHGPYIHILTNINSLNLHLHSN*

>peptide 3 (33 aa)
MAAFKFFLLPAISNINIPKLYTSALYDTPPMFL*

>peptide 4 (47 aa)
MHLWYLNCPQHHRLVFAVDIRKALEVFGGSQFLLQAFLLLCSLKGVQ*

>peptide 5 (33 aa)
MNQISLISHTLRHYICISRQQSKLGLYSYIKTN*

>peptide 6 (40 aa)
MLIEGRSIGFICMHHNATMIIFFMIFISSSVASPISISFP*

Sequence

>CNT30652116
ATGAACCAAATAAGTCTTATTTCTCATACTTTGAGACATTATATTTGCATATCAAGACAGCAATCAAAGTTAGGTTTGTATTCATACATTAAAACAAACT
AAAAATGTTTTTATGCTATCAATTTATTGAGAAGTTTCATGGCCCTTACATCCACATATTGACAAATATAAATTCACTTAATTTGCATCTGCACTCAAAT
TGATCTCTGTAGATTCTGTCATTCTTGATGCACTTGTGGTACTTAAATTGTCCTCAACATCATCGACTGGTATTTGCTGTGGATATAAGAAAGGCTTTGG
AGGTATTTGGAGGCTCTCAATTTCTCCTTCAAGCATTTCTACTACTATGCTCATTGAAGGGCGTTCAATAGGTTTCATTTGTATGCACCACAATGCCACT
ATGATCATCTTCTTTATGATTTTCATTTCATCTTCAGTGGCATCTCCTATTTCGATCTCCTTCCCTTGATTCAATTGATCAGCAACCCATGTAGGAAAGT
AGATTTGGCTAAATTCGCTTGAATGACCTATGGCTGCATTCAAGTTCTTCCTTCTACCTGCCATTTCCAACATTAACATTCCAAAACTATATACATCTGC
TTTGTATGATACACCTCCAATGTTTTTGTAGAATAACTCTGGAGCCATGTATCCTATGGTTCCTCTTGCTG