Detailed information on CNT30651680


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373827Rosa chinensisArabidopsis thaliana30.6713.8797.18142forward
CNT30402960Rosa chinensisBeta vulgaris32.6112.9495.36151forward
CNT30708145Rosa chinensisGlycine max27.6544.9192.97128forward
CNT30314569Rosa chinensisCamelina sativa39.9611.4295.14185forward
CNT3058255Rosa chinensisAmborella trichopoda21.381.885.8699reverse complement
CNT3037914Rosa chinensisCucumis melo38.238.3290.96177forward
CNT30103326Rosa chinensisOryza rufipogon39.9621.8295.14185forward

Expression of CNT30651680

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMLSWSFRMISHTGTKTRPGLPRGAAVWNLGQWAKARSSNIA*

Sequence

>CNT30651680
GGCGATAATAACTACTCCGCATCCCAAAGTGCGCTGCCCTCCTAGGCGCGCAACACTAAGTAATCAAGCCAACCCACATTACTGACTAACGGTGGATAAT
CATATTTCTTAGAGGTACTAAATACAACTCCATGAATGAGCAAAATGAAGGTTGCATTAATGATAAAGATCTCTGGGGAAACCGTAGTTGGTTAGGTAAA
GGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTAAGACACGGCCTGGACTCCCACGGGGGGCAGCAGTGTGGAA
TCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGAAAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCACGATCATGACAG
GACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCAGTAAGATCGCAGGGGGGGG