« Back to Rosa chinensis search


Detailed information on CNT30651444


BLAST search results

BLAST vs Swiss-Prot:
sp|O04133|SRC2_SOYBN, E-value = 8e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30363948Rosa chinensisSorghum bicolor8.4325.8289.8779forward

Expression of CNT30651444

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSLSPRLRSQTSLTWRERRFCWVRVSSTVNLMGKLKEGLVPQARTTLVLVFCLP*

>peptide 2 (37 aa)
MRFTSFRSLAETSSSSRVLCSILVSEKKRDREKRNRFR

Sequence

>CNT30651444
ATTCAGTAAATGAAAATGTCATAGACTCGTAGGATTCGGAATCCAAACAACACGAAAAGAGTACTCTAAAATCTAAACAAAACCAACATAACGGTTCCCA
AATCAAAAACCACCGCAACCGCCGCCGCCGCAGCCGCCGCCACCGCATCCACCGCCTCCATCGGAAATCATATCTCCAATCAACAACCCACCAAGGGCAC
CTCCTAGCAACCCAGCGCCCAATCCCATTCCAAACTTGCTCTTCTTCTTTTCCGGTTGCTGCACTTGTTGCACCGGCGCTTCCGGATATCCAGCCCCAGC
TGGCGGCGGCGGCGGGTAGCCATACCCGGGTTGAGGCGGCGGGTAACCCGACCCGGACGAACTCGTTGCCTGAAGAGGGTACGCCCCGTACGCCGGCGCG
GACGGTCCTCCAACCGGATAAGCCGTCACCGGCTCCCCCTTCTTGGCCACCTCCGGCACCGGCGCGGCGACCTTCTCCCCAAATTTATAAGAAAAGCTGA
GCTCGCCCTTGGGCTTCCCGGAGGGTCGTCTGACCTGGTACGATATGAACTTCATGTTCTTGGGGTCGGCGGAGTCGAAGAGCTCCTTGACGGGGACGTA
AACGACGCCGATGTCCTTGTCGCCGAGGCTGCGCTCGCAGACGAGCTTGACTTGGAGGGAGAGGCGGTTCTGTTGGGTGAGAGTGTCGTCGACGGTGAAC
CTCATGGGGAAGTTGAAGGAGGGGTTGGTGCCGCAGGCGCGGACGACTTTGGTCTTGGTCTTCTGCTTGCCGTAGTAGGCGTCGCCGTCGAGGGAGACGA
CGGCGTAGACGTCCATCTTGGAGATGAGGTTCACGTCCTTCAGGTCCTTGGCGGAGACCAGCTCCAGCTCCAGAGTCCTTTGCTCCATTTTGGTTTCAGA
AAAAAAGAGAGACAGGGAGAAGAGAAATCGATTTAGA