Detailed information on CNT30651330


BLAST search results

BLAST vs Swiss-Prot:
sp|P34823|EF1A2_DAUCA, E-value = 9e-50

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639730Rosa chinensisNymphaea colorata54.6526.2288.38241forward
CNT30316757Rosa chinensisCorylus avellana54.219.9591.63239forward
CNT30274113Rosa chinensisChenopodium quinoa54.4238.4687.5240forward
CNT3020462Rosa chinensisCitrullus lanatus54.221.3489.96239forward
CNT30525464Rosa chinensisPhaseolus vulgaris37.1929.0389.63164forward
CNT30629525Rosa chinensisVigna unguiculata53.7455.1289.87237forward
CNT30564256Rosa chinensisActinidia chinensis53.5120.2788.14236forward
CNT30238010Rosa chinensisBrassica oleracea55.119.8589.3243forward
CNT30509820Rosa chinensisSolanum lycopersicum26.9853.1290.76119forward
CNT30439068Rosa chinensisAegilops tauschii82.3166.1282.92363forward
CNT30608730Rosa chinensisGossypium raimondii53.7439.589.03237forward
CNT30228831Rosa chinensisAnanas comosus43.3160.8387.96191forward
CNT30203420Rosa chinensisHelianthus annuus55.148.4183.13243forward
CNT30127375Rosa chinensisCorymbia citriodora53.7442.4788.61237forward
CNT30624959Rosa chinensisDaucus carota36.0546.7686.79159forward
CNT30480841Rosa chinensisArabidopsis halleri44.2231.487.69195forward
CNT30151899Rosa chinensisPrunus persica35.8314.3293.04158forward
CNT3052982Rosa chinensisAmborella trichopoda33.1111.1693.84146forward
CNT30148140Rosa chinensisBrachypodium distachyon39.2345.5391.33173forward
CNT30176038Rosa chinensisVigna angularis43.9948.7489.69194forward
CNT30113122Rosa chinensisFicus carica54.4228.9288.33240forward
CNT3050294Rosa chinensisCucumis sativus54.6539.3188.38241forward

Expression of CNT30651330

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SKTHNLNIRCLPRVKLHCDPFTSSWQQTW*

>peptide 2 (47 aa)
MMMTWDVKLAASFAGSSLELDATKPRLRSFTATFLTLNPTLSPGRAS*

>peptide 3 (33 aa)
MSRTAKRPKGGYSEKCGNQELGHNHYQSVQGGS*

Sequence

>CNT30651330
GTTCAAAAACACACAACTTAAATATAAGATGTCTTCCGCGGGTAAAATTGCATTGTGATCCATTCACTTCTTCTTGGCAGCAGACTTGGTGACCTTAGCA
CCACTTGGATCCTTCTTCTCCACGTTCTTGATAACACCAACAGCAACAGTCTGTCTCATGTCACGGACAGCAAAACGTCCCAAGGGTGGGTACTCAGAGA
AGTGTGGCAATCAAGAACTGGGGCATAACCATTACCAATCTGTCCAGGGTGGTTCATGATGATGACCTGGGATGTGAAGTTGGCAGCCTCCTTTGCAGGA
TCATCCTTGGAGTTGGATGCAACAAAACCACGCTTGAGATCCTTCACAGCAACATTCTTAACATTGAACCCGACATTGTCACCAGGGAGAGCCTCCTGAA
GAGCCTCGTGATGCATCTCAACAGACTTAACTTCAGTGGTC