Detailed information on CNT30650912


BLAST search results

BLAST vs Swiss-Prot:
sp|P42736|RAP23_ARATH, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315049Rosa chinensisCorylus avellana20.9422.7583.55152forward
CNT30546900Rosa chinensisIpomoea triloba23.1431.7682.74168forward
CNT30515299Rosa chinensisJuglans regia24.5235.7485.96178forward
CNT30375732Rosa chinensisArabidopsis thaliana20.5216.6779.87149forward
CNT30710115Rosa chinensisGlycine max13.523.984.6998forward
CNT3090378Rosa chinensisSolanum tuberosum23.4243.0482.35170forward
CNT30626852Rosa chinensisDaucus carota21.4918.0183.33156forward
CNT30621639Rosa chinensisCajanus cajan24.9318.5382.32181forward
CNT30704079Rosa chinensisPrunus avium22.7359.5786.67165forward

Expression of CNT30650912

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVVAFLIHELMLTTLLLVMCNQAQERLQARDLLFQLTLMVTSSSLTLTVELILE*

>peptide 2 (54 aa)
MPIIAGAVDSRAMHRFLEGGWSWAEAGAGAGTGAGCGGKLSLALSPRMRLAASS*

Sequence

>CNT30650912
TTTGAACGAAACAACAAGAACGATGATGCATGCAAATACAAGCTTCTTTATTCTTCATACATAATTATATAATAGTACTCTATTCACAATGCAACAGATC
CAAATAGCTAGATTGCTCAGCAGCAAAGCAACACACAGATTAAGACAGTAATTACTATTAAACATAGATGATGAACCAGCCTCAAGTTCCAAACACACAC
ACTGGGCACACGAACACATACACATAACATAATGGACGGACTGATAGGCTTAAATGGTGGTTGCTTTCCTAATACACGAGCTGATGCTCACGACCTTGCT
GCTGGTGATGTGTAACCAGGCCCAGGAAAGACTCCAAGCTCGAGATTTGCTCTTTCAGCTCACACTCATGGTGACCAGCAGCAGTCTCACTCTTACAGTA
GAACTCATTCTGGAATGAAGGATAGTAAGGCTCCATGCCCATCATAGCTGGTGCAGTCGACTCGAGAGCCATGCACCGCTTCTTGGAGGGTGGCTGGAGC
TGGGCCGAAGCCGGAGCCGGAGCAGGAACCGGGGCAGGTTGTGGAGGGAAGTTGAGCTTGGCCTTGTCGCCGCGGATGCGCCTGGCGGCTTCATCATAGG
CCCGAGCAGCTTCCTCGGGTGTGTTGAAGGTTCCGAGCCAGACTCTTACGCCTTTGTGCGGGTCGCGAATCTCGGCCGCCCATTTGCCCCATGGCCTCTG
CCTTATTCCTCTGTAGATGTTCTTCC