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Detailed information on CNT30650801


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 2e-135

BLAST vs NONCODE:
NONATHT002930, E-value = 1e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697365Rosa chinensisOryza sativa9.4446.6290.32124forward
CNT30677245Rosa chinensisSetaria viridis5.023090.9166forward
CNT30524209Rosa chinensisSetaria italica44.4431.4884.93584forward
CNT30617858Rosa chinensisSesamum indicum6.9326.2287.9191forward
CNT3070360Rosa chinensisQuercus suber16.8277.5486.43221forward
CNT30709835Rosa chinensisGlycine max27.0946.1191.57356forward
CNT30179070Rosa chinensisSecale cereale14.4638.786.84190forward
CNT30558965Rosa chinensisActinidia chinensis13.3252.0885.71175forward
CNT30237993Rosa chinensisBrassica oleracea16.1343.0985.38212forward
CNT30248419Rosa chinensisAvena sativa13.3238.6382.29175forward
CNT3074841Rosa chinensisBrassica juncea15.9142.2290.91209forward
CNT30612225Rosa chinensisArabis alpina9.8951.3885.38130forward
CNT304860Rosa chinensisZea mays17.7381.4781.12233forward
CNT30714749Rosa chinensisMalus domestica golden13.8578.4586.81182forward
CNT30365067Rosa chinensisSorghum bicolor13.8530.1388.46182forward
CNT30620724Rosa chinensisCajanus cajan44.7591.5984.86588forward
CNT30117918Rosa chinensisOryza nivara18.5727.1486.07244forward

Expression of CNT30650801

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MPSEYLLVRALPRASMTAKEVKFSEAMSSMPRHWRRFSFSIRSWISGSTDSRLVLPHAFTASIGENERQRIERGGEEEEEEMVVV

>peptide 2 (43 aa)
MLIQVHFHLHPSHVYLPDTACDSDDRPKFPNHEGPQHSSMNYL*

>peptide 3 (59 aa)
DLDDNTKPTIFQKWIAMTPTLITGFTSDLKQFIKMNLRLLSLLYYQFLIIKTGRQKRQL*

>peptide 4 (28 aa)
MRLLPPLERMRDRELREVEKKKKKKWLWW

Sequence

>CNT30650801
GATCTAGATGACAATACCAAACCCACAATATTCCAAAAATGGATTGCAATGACACCGACACTAATTACTGGATTCACTTCAGATTTAAAACAATTTATTA
AAATGAATCTGCGACTGCTATCTTTATTATATTATCAATTCTTAATTATTAAAACAGGGAGGCAAAAAAGACAGCTTTAAGAAAACGACATCAAACAACA
GATCCAGAAATTGTGCAAGCAAGCAACACCCAAAAGCTAAACGTGCATCTCACTCCAGATCTACTCCACATTCAATCAACTAAATAAAAACTCACTGTCT
ACTTTCACCTCATCAATAACAAACTATGTTAATTCAAGTCCATTTCCATTTGCATCCTAGTCATGTATACCTGCCTGACACTGCATGTGACAGTGATGAC
AGACCTAAATTCCCAAACCATGAAGGACCACAACACAGCAGCATGAACTATCTATAACATTTACATCACCTGGGTCTCACAATTCAAGATCTTGATCTAA
AAACGAAAGCACTGAAATTTATATGGAAAAAAACAGCAAACTAAACCAGATCTTTATTAGATCTGAGCACTAAGTATAACAAAACCCAATAAGAACGCAC
CTGAGCACAAACAAGGCCACTGATGTGAGCCATGTCACAGAGCAAAAGCGCACCGCACTTATCCGCCACAGCCCTGAACCTAGCGTAGTCCCAGTCTCTG
GGATACGCACTCCCACCGCAAATGATCAATCTTGGCCTGAAATCCAAGGCCTTCTCCTCCAGCTTGTCGTAATCAATGTACCCGGTGGAGGAATTCACCT
TGTACGGCAGACTCTCGAAGTAGATCGAGGTGGCGGAGATCTTCTTCCCGCCGGAGGGGAGGTCCAGGCCCATGATGCGGTCGTGGGGCTGGAGCACGGC
GGTGTAGGCGGCGAAGTTGGCCGGGGAGCCGGAGTAAGGCTGGACATTGACGCCCCACTGAGACGCGTCGAGGTGGAAAGCCTGGAGGGCGCGTGAGCGG
CAGAGGTTCTCGATCTGGTCGATGTACTCGTTGCCGCCGTAGTAGCGGTTGCCGGGCATGCCCTCGGAGTATTTGTTGGTGAGGGCGCTGCCGAGGGCCT
CGATGACGGCGAAGGAGGTGAAGTTCTCGGAGGCGATGAGCTCGATGCCGCGGCATTGGCGACGCTTCTCCTTCTCGATCAGGTCGTGGATCTCTGGGTC
CACGGACTCCAGGTTGGTGTTACCCCATGCGTTTACTGCCTCCATTGGAGAGAATGAGAGACAGAGAATTGAGAGAGGTGGAGAAGAAGAAGAAGAAGAA
ATGGTTGTGGTGGT