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Detailed information on CNT30650401


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT002763, E-value = 1e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Rosa chinensisSetaria viridis34.9648.8185.39308forward
CNT30534084Rosa chinensisEucalyptus grandis19.9886.2792.05176forward
CNT30513228Rosa chinensisJuglans regia37.3442.2987.23329forward
CNT30375849Rosa chinensisArabidopsis thaliana35.5327.9584.98313forward
CNT30403132Rosa chinensisBeta vulgaris21.6859.592.67191forward
CNT30504596Rosa chinensisNicotiana attenuata25.4336.4284.82224forward
CNT3096726Rosa chinensisSolanum tuberosum25.5494.9485.78225forward
CNT30194314Rosa chinensisSecale cereale7.2626.3487.564reverse complement
CNT30249492Rosa chinensisAvena sativa9.0823.468580forward
CNT30136078Rosa chinensisLolium perenne24.8684.5684.93219forward
CNT309700Rosa chinensisZea mays9.3125.3187.882forward
CNT30211728Rosa chinensisHelianthus annuus22.3674.6280.71197forward
CNT30717191Rosa chinensisMalus domestica golden17.4876.6286.36154forward
CNT30624889Rosa chinensisDaucus carota22.5952.3784.42199forward
CNT30689645Rosa chinensisTriticum urartu9.9920.7190.9188forward
CNT30721247Rosa chinensisTriticum spelta33.1455.6282.88292forward
CNT30367469Rosa chinensisSorghum bicolor33.642.4784.46296forward
CNT3027382Rosa chinensisPopulus trichocarpa35.364.2686.82311forward
CNT30118300Rosa chinensisCitrus clementina13.2843.0188.89117forward
CNT30148668Rosa chinensisBrachypodium distachyon23.3867.5485.92206forward
CNT30118099Rosa chinensisOryza nivara30.3132.7684.27267forward
CNT30604869Rosa chinensisOryza punctata16.9157.0983.89149forward

Expression of CNT30650401

Peptides detected in this lncRNA

>peptide 1 (44 aa)
PTKIFHHTVIKQSNMTCKIQVRCIESFSSFEATVHQSIHLALAS*

>peptide 2 (38 aa)
MVFLESGCHKRQDQYQHHTSLPRGRPTGASHQNENSQW*

Sequence

>CNT30650401
GCCTACTAAGATATTTCATCACACAGTTATTAAACAATCAAATATGACTTGTAAAATCCAGGTAAGATGCATAGAATCCTTCAGTTCTTTTGAAGCCACC
GTTCATCAAAGCATTCATTTAGCACTGGCAAGCTGAGTGCGGAGTTGCTTGGCAGCAGCAACCATAGCACTGAGTGCTGGCTTAACCTCAGCGTACTTGC
GAGTCTTAAGCCCACAGTCTGGGTTGACCCACAAGATATTTGTCTCGAGGACTGCAAGCATCTTGTTAATCCGGTCAGCAATCTCCTCAGTTGATGGTAT
TCTTGGAGAGTGGATGTCATAAACGCCAGGACCAATACCAGCACCATACTTCACTCCCTCGCGGAAGACCGACAGGAGCTTCTCATCAGAACGAGAATTC
TCAATGGTGATCACATCAGCATCCATGTCGATGATCGAGTGGATGATGTCGTTGAAGTTGGAATAGCACATGTGAGTGTGAATCTGTGTAGTGAGCTTGC
TCAGACTTCCTGAGAGGCAACCCTTCTCTCAACGCAGCCTCATCAATTTGAATAACATTGATACCAGCTTTCTCGAGATCCTCCACTTCATCCTTGATGG
CCAAAGCAATCTGGTAGGTAGTCTCAGACCTGGGCTGGTCAACTCTAACAAAGGACCAGTTGAGGATGGTAACAGGGCCTGTAAGCATTCCCTTCATTGG
GCGGGCAGTCATGCTCTGAGCAGCAGATGACCAGAACACAGTCATTGGCTTTGGGCGGCTCACATCACCATAGATGATTGGTGGCTTCACACATCGAGAT
CCATAAGATTGCACCCACCCATTGACAGTAAAGGCAAACCCTGATAATTGCTCCCCAAAGTACTCAACCATGTCGTTCCTC