CANTATAdb - search

Detailed information on CNT30650379

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30555411	Rosa chinensis	Oryza glaberrima	15.98	30.77	98.39	124	reverse complement
CNT30662247	Rosa chinensis	Triticum dicoccoides	10.95	24.78	92.94	85	reverse complement
CNT30202855	Rosa chinensis	Helianthus annuus	11.34	26.99	92.05	88	forward
CNT30683778	Rosa chinensis	Triticum urartu	10.44	25.71	95.06	81	reverse complement
CNT3024232	Rosa chinensis	Populus trichocarpa	5.8	21.95	93.33	45	forward

Expression of CNT30650379

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MIVYMQDVLGSQTIHCDNKALLVQVSRSWVSKTRCRRFKSTERDSVFLLPKIKN*

Sequence

>CNT30650379
GCTTAAATTCTTTGACTCCTCGGTACTCAATTAAATCCTCTTTTTTGAGGATTGAATGAGAAGTAGAAGTAGAAGGCGCTCCGGTGGGATCCTCACGGAC
AGAAAAAGATTGCAGTCAGTTTGATCCGTAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAAT
AGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCAGTAAGTGAGGCGTTTTTAGGTCGTGTTGTAAATGCACTGGCTAAACCTATT
GATGGCCGGGGTGAAATTTCAGCCTCTGAATCTTGGTTAATTGAGTCTCCTGCTCCTGGTATTATTTCAATGTCAAGGGTTCGAATCCTGTCATGCCTAC
CTATTACTTATCTTCTGAACAGTAACGGGGGATCAATTGAGATCGATTAAAAGAAAATTGGATATACATAAAAAATCTTTAATTTTATGATAGTATATAT
GCAAGACGTATTGGGGTCACAAACTATTCATTGTGATAATAAAGCGCTCTTAGTTCAGGTCAGTAGATCGTGGGTCTCCAAAACCCGATGTCGTAGGTTC
AAATCTACAGAGCGTGATTCTGTGTTCTTGTTACCTAAAATAAAGAATTAACCAAACTTGCCCGATGTAGAGGCAATCAAGAAAGCTGCATAAGCAGAAG
AAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTACCAGCAGCCGCGGTAATACAGAGGATGCAAGC