CANTATAdb - search

Detailed information on CNT30649899

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-46

BLAST vs NONCODE:
NONSTUT000620, E-value = 2e-22

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30667496	Rosa chinensis	Triticum dicoccoides	32.62	48.51	92.54	228	forward
CNT30623440	Rosa chinensis	Daucus carota	31.62	11.11	91.4	221	forward
CNT30580715	Rosa chinensis	Echinochloa crusgalli	31.62	45.47	91.86	221	forward
CNT30592819	Rosa chinensis	Eragrostis curvula	32.47	38.8	92.51	227	forward

Expression of CNT30649899

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICMIGDWDWIE*

Sequence

>CNT30649899
CATAGTTCACCAAAGTAAAACCACATCCACAATCCATCAAGAAGAAAACAAATTTAGATAACTAAAGGAACATTATTTATTATATAGATAGGAGTCTTGA
CATTGCAATTAAAAAGGAGAACAGAACACAAACTTAACAGAACATCATCAAATTGGCAAACTTTGCCAATCGACCTGAAAACTTAACAAGGAAAAACATA
GCAAATCAGCAAATCACCGGAGACGGGACCGAGTAGGCTTCTAGAAATCACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTT
GTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG
ACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATGATTGGGGATTGGGATTGGATCG
AGTAAAGAGAGGGATTTGAAATCTGGGGATTTAGAGAGAAGCGTTTGAGAAGTTGTGAGGATGGAGGAAGGGAAGAGGTGGGTTATATAGGGAGATAGCC
GACTCGAGTCTCGAGATGCTTTACGTTTCCGACAAGGACGACGAATTAGTGGTCAAGAAGAGTCCGTGAAATGAACGGTCCGGAAGGTTCCGGGTGCTG