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Detailed information on CNT30649450


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-40

BLAST vs NONCODE:
NONCQUT001608, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372132Rosa chinensisArabidopsis thaliana35.9832.9783.57213forward
CNT30710937Rosa chinensisGlycine max36.4922.2584.26216forward
CNT30235713Rosa chinensisBrassica oleracea20.7824.0286.18123forward
CNT30146878Rosa chinensisMedicago truncatula34.2916.6781.28203forward
CNT30585439Rosa chinensisEchinochloa crusgalli21.7920.3885.27129forward
CNT30176025Rosa chinensisVigna angularis33.2830.7881.73197forward
CNT30335392Rosa chinensisCynara cardunculus33.9524.6685.57201forward

Expression of CNT30649450

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGDETDALHLTDVVESDDTDESIWVCLLDLLELLQHLCRVGASEHG*

>peptide 2 (40 aa)
MIRTKASGCAFLTSSSSFNTCAESVHPNMGSFHMVQYRPS*

Sequence

>CNT30649450
TAAAATTAAAAACCAACGGTGAAACACGGATAAGCTTTATTCATTACTTCTCAACAACCACTCCATTCTGAATCCGAGAAACAGAACCAAATTCGAAACA
AACAAGATTGTCTCGAAAAAGGAAAGAGAAAGAACGGTGTTGCACATGCAGCCTAATTAAAACAAATACAAATTCAAATTGGAATTCAAAGGGAACCACA
AACGGACCCAGCAACAGCTTAAAAAGCTAGCTCCAGGGGTACATTACATTAGATATAAAGGATGGATGGGCGATGAAACTGATGCACTGCACTTGACGGA
CGTTGTCGAATCCGATGATACGGACGAAAGCATCTGGGTGTGCCTTCTTGACCTCCTCGAGCTCCTTCAACACTTGTGCAGAGTCGGTGCATCCGAACAT
GGGTAGCTTCCACATGGTCCAGTACCGGCCGTCATAGTATCCAGGTGACCTGTGGTTCTCACGGTACACGAATCCGTGCTATACATACGTACAATTACAA
CACCACCAATGACCAGTTAAAAAAAAAAAAAAAATAACTTGAGTAAATTATACAATTGAAATAATAATTAGCAAGTAATATTAACCTCCAAC