Detailed information on CNT30647597


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673952Rosa chinensisSetaria viridis59.6146.2793.75304forward
CNT30525798Rosa chinensisPhaseolus vulgaris40.5926.8193.24207reverse complement
CNT30177674Rosa chinensisSecale cereale61.1815.3793.59312reverse complement
CNT30221081Rosa chinensisHordeum vulgare61.1815.4193.59312forward
CNT30384202Rosa chinensisTriticum turgidum59.6118.3693.75304reverse complement
CNT30538116Rosa chinensisBrassica napus52.9422.2894.81270forward
CNT3017925Rosa chinensisZea mays61.1827.3494.23312forward
CNT3067405Rosa chinensisLeersia perrieri61.1875.3691.03312forward
CNT30203328Rosa chinensisHelianthus annuus60.5937.5594.82309forward
CNT30596724Rosa chinensisOryza meridionalis28.045.9192.31143reverse complement
CNT30371505Rosa chinensisOryza glumipatula38.0478.5493.81194forward
CNT30409295Rosa chinensisPapaver somniferum60.7854.8793.55310forward
CNT30149641Rosa chinensisBrachypodium distachyon61.1815.4893.91312forward
CNT30102660Rosa chinensisOryza rufipogon39.2253.4892200forward
CNT30576588Rosa chinensisOryza barthii24.5128.4792.8125reverse complement
CNT30604605Rosa chinensisOryza punctata41.9692.6491.12214reverse complement

Expression of CNT30647597

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAQTPTGGSSGEFSAMGESLTEQCRMEVEGLRVMNFFSRRRSNDGIWGISIG*

Sequence

>CNT30647597
TTACGACTTAATATCATATTTATATCATATTTTCGTTATTTATATTTATTTAGATATTTAGAAATAGAAATGATCTCAAACTGTTAATCAATCGAGTAAT
ATGATAAATGCGTTGAATATTTGTTGGAAGACATGAAATAAATTGAAAAAAAGAAGAAGGGGAAGTCATAGCAAAAGGACGTGGCATTGGGGCATTTGTC
CGCCCGAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGTGATGATCAGTAGCTAGTCCGAGAGGATGATCAGCCACACTG
GGACTGAGACATGGCCCAGACTCCTACTGGAGGCAGTAGTGGGGAGTTTTCTGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCATGGAGGTAGAAGGC
CTACGGGTCATGAACTTCTTTTCTCGGAGAAGAAGCAATGACGGTATCTGGGGAATAAGCATTGGCTAACTCTATGCCAACAGCCGCGGTAATACAGAGG
ATGCAAGCGT