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Detailed information on CNT30647274


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AU11|PKS1_RUBID, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Rosa chinensisQuercus lobata21.9190.582.41381forward
CNT30378024Rosa chinensisArabidopsis thaliana7.8824.8681.75137forward
CNT30195402Rosa chinensisPisum sativum37.7244.9678.2656forward
CNT30486019Rosa chinensisOlea europaea11.1633.5181.44194forward
CNT30507146Rosa chinensisNicotiana attenuata23.1737.8880.65403forward
CNT3045136Rosa chinensisPrunus dulcis28.9881.0388.1504forward
CNT30156257Rosa chinensisPistacia vera49.4559.9781.28860forward
CNT3096581Rosa chinensisSolanum tuberosum20.318.981.87353forward
CNT30564019Rosa chinensisActinidia chinensis20.1847.3783.19351forward
CNT3074040Rosa chinensisBrassica juncea7.4229.1980.62129forward
CNT30597791Rosa chinensisFraxinus excelsior5.1229.7783.1589forward
CNT30466546Rosa chinensisSaccharum spontaneum12.0878.9580.95210forward
CNT30610101Rosa chinensisGossypium raimondii38.2425.5183.46665forward
CNT30151821Rosa chinensisPrunus persica27.3782.6486.76476forward
CNT3022840Rosa chinensisPopulus trichocarpa55.6699.3879.44968forward

Expression of CNT30647274

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MLPYSDNICLVASNFSGLRPNLASTWSKIAGPPGCAIQNSEFQSVIFKGLKASLRLFSMFFEISPGTSLRR*

>peptide 2 (66 aa)
MPVNGSVTIREDSLSCRDQLEQRLLNLRQWVGPNNNGRSTITEQGLAHKTIEMSVARPTESHGSDL*

>peptide 3 (47 aa)
MWNNIIHHYIYCYIGQASKFTSECPIEIHQKKKSKNGNLAKKVEWKQ*

>peptide 4 (38 aa)
MIFRDVANAHILAFENPSLLSIFWESKLLTKLQELLII*

>peptide 5 (31 aa)
FCERSQVCSSYERSQIHRYVVLITLIIFACY*

>peptide 6 (29 aa)
MLLKRQLAHSHYLQLRFSSALVCGLKDLS*

Sequence

>CNT30647274
TTTTGTGAAAGATCACAGGTATGTAGTTCTTATGAACGATCACAGATTCACAGGTATGTAGTTCTTATAACTCTAATTATTTTTGCATGCTATTAATTTA
TGTTGTTTCCTGGTTTTGCTTAGGATACCGCTTCTAATAAGAACATAATTGGACAAACCTTATTGCTTTCATGCTATTGAAAAGACAATTGGCGCATTCT
CACTACTTGCAACTTCGGTTTTCATCAGCTTTGGTGTGTGGTCTCAAAGATCTTAGCTGAGGAAGCTGCTTGGGAATTTGCAAAACAAAACAGAATTGAT
ATGTTTACACTTACAGTACATGCATGAATAGTGAGTAGCCTTCTCCGATAGCCAACTGTGAACACAAGCATGGAGCCCCTTCTAAGACTCATAAACGGTA
CAATAAAGAAGGATCTCTCATAGATGGGATGATATTTAGAGATGTTGCAAACGCACATATTCTAGCATTTGAGAATCCTTCCCTGCTCTCAATCTTCTGG
GAAAGTAAGCTTCTAACTAAATTGCAGGAACTTTTAATCATATGAAATATGTGGAATAACATTATTCATCATTACATATATTGCTACATAGGACAAGCAT
CTAAGTTTACCTCAGAATGCCCAATTGAAATTCACCAGAAAAAAAAATCCAAAAACGGAAACCTAGCCAAGAAAGTAGAGTGGAAACAATAGATATATAA
GAACAAATCCGGGAGCAGATCACCCAAGTGAATCCAGATGCCTTCAAGTCTAAGCAGCCACACTGTGAAGCACGACGGTCTCGACGGTGAGCCCAGGCCC
AAACCCAAATAGAACACCCCACTCTAGCCCTTCTCCAGTGGTCTTGTGCCCATTAGCTGCAGACTTCCTCCTCACCTCGTCCAAAATAAACAACACACAA
GCACTAGACATGTTGCCATACTCGGATAATATATGCCTTGTGGCTTCTAACTTTTCGGGTTTGAGGCCCAATTTAGCCTCTACTTGGTCCAAAATTGCAG
GGCCACCCGGGTGTGCAATCCAGAATAGTGAGTTCCAGTCCGTGATATTCAAAGGTTTGAAGGCCTCATTGAGGCTCTTCTCGATGTTCTTCGAAATCAG
CCCAGGAACATCTTTGAGGAGGTGAAATGTGAGCCCAACTTCACGAAGATGCCCGTCAATGGCTCCGTCACTATCAGGGAGGATAGTTTGAGCTGCCGAG
ACCAACTCGAACAAAGGCTTCTCAACCTCAGGCAATGGGTCGGCCCCAACAATAATGGCCGCAGCACCATCACCGAACAAGGCTTGGCCCACAAGACTAT
CGAGATGAGTGTCGCTAGGCCCACGGAAAGTCACGGCAGTGATCTCTGAGCAAACAACAAGAACACGTGCACCTTTGTTGTTCTCGGCCAAGTCCTTAGC
CAACCGGAGCACCGTGCCTCCGGCGAAACACCCTTGTTGGTACATCATGAGACGCTTCACGGACGGGCGGAGACCTAAGAGCTTAGTAAGCTGGTAGTCA
GCCCCGGGCATGTCGACGCCACTAGTGGTACAAAAGACCAAGTGGGTGATTTTGGACTTGGGCTGACCCCATTCCTTAATAGCCTTAGTGGCAGCCTCTT
TTCCAAGCTTTGGAATTTCAACAACCACCATATCTTGTCTTGCATCAAGTGAAGGGGCCATGTACTCACACATACTAGGATTCTCCTTAAGAATTTCTTC
GGTCAAGTACATGTAGCGCTTCTTGATCATAGATTTGTC