« Back to Rosa chinensis search


Detailed information on CNT30646903


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AU11|PKS1_RUBID, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381108Rosa chinensisManihot esculenta17.2540.8681.14228forward
CNT30524897Rosa chinensisPhaseolus vulgaris35.476.2279.06468forward
CNT30628905Rosa chinensisVigna unguiculata48.1144.5478.77636forward
CNT3087878Rosa chinensisVigna radiata23.0719.5181.97305forward
CNT30171320Rosa chinensisTrifolium pratense19.6760.7583.46260forward
CNT30145784Rosa chinensisMedicago truncatula35.7843.6379.7473forward
CNT30365392Rosa chinensisSorghum bicolor10.6724.3181.56141forward
CNT30355633Rosa chinensisLactuca sativa16.8740.8484.3223forward
CNT30705527Rosa chinensisPrunus avium18.3152.2789.67242forward
CNT30644974Rosa chinensisCannabis sativa36.2359.6581.21479forward
CNT3030385Rosa chinensisTheobroma cacao9.9132.8384.73131forward
CNT30114121Rosa chinensisFicus carica47.3538.7483.23626forward

Expression of CNT30646903

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MLPYSDNICLVASNFSGLRPNLASTWSKIAGPPGCAIQNSEFQSVIFKGLKASLRLFSTFLEISPGTSLRR*

>peptide 2 (66 aa)
MPVDGSVTVRKDSLSCRDQLEQRLLNLGQWVRPNNNRRSTITEQGLAHKTIKMSVARPTESHGSNL*

>peptide 3 (58 aa)
MIFRDVANAHILAFENPSLLSIFWERQASKFTSECPIEIHQKKKSKNGNLAKKVEWKQ*

>peptide 4 (38 aa)
FCERSQLWCVVSKILAEEAAWEFAKQNRIDMFTLTVHA*

Sequence

>CNT30646903
TTTTGTGAAAGATCACAGCTTTGGTGTGTGGTCTCAAAGATCTTAGCTGAGGAAGCTGCTTGGGAATTTGCAAAACAAAACAGAATTGATATGTTTACAC
TTACAGTACATGCATGAATAGTGAGTAGCCTTCTCCGATAGCCAACTGTGAACACAAGCATGGAGCCCCTTCTAAGACTCATAAACGGTACAATAAAGAA
GGATCTCTCATAGATGGGATGATATTTAGAGATGTTGCAAACGCACATATTCTAGCATTTGAGAATCCTTCCCTGCTCTCAATCTTCTGGGAAAGACAAG
CATCTAAGTTTACCTCAGAATGCCCAATTGAAATTCACCAGAAAAAAAAATCCAAAAACGGAAACCTAGCCAAGAAAGTAGAGTGGAAACAATAGATATA
TAAGAACAAATCCGGGAGCAGATCACCCAAGTGAATCCAGATGCCTTCAAGTCTAAGCAGCCACACTGTGAAGCACGACGGTCTCGACGGTGAGCCCAGG
CCCAAACCCAAATAGAACACCCCACTCTAGCCCTTCTCCAGTGGTCTTGTGCCCATTAGCTGCAGACTTCCTCCTCACCTCGTCCAAAATAAACAACACA
CAAGCACTAGACATGTTGCCATACTCGGATAATATATGCCTTGTGGCTTCTAACTTTTCGGGTTTGAGGCCCAATTTAGCCTCTACTTGGTCCAAAATTG
CAGGGCCACCCGGGTGTGCAATCCAGAATAGTGAGTTCCAGTCCGTGATATTCAAAGGTTTGAAGGCCTCGTTGAGGCTCTTCTCAACGTTCTTAGAAAT
CAGCCCGGGAACATCCTTGAGAAGGTGAAATGTGAGCCCAACTTCACGAAGATGCCCGTCGATGGCTCCGTCACTGTCAGGAAGGATAGTTTGAGCTGCC
GAGACCAACTCGAACAAAGGCTTCTCAACCTCGGGCAATGGGTCAGACCCAACAATAATCGCCGCAGCACCATCACCGAACAAGGCTTGGCCCACAAGAC
TATCAAGATGAGTGTCGCTAGGCCCACGGAAAGTCACGGCAGTAATCTCTGAGCAAACAACAAGAACACGTGCACCTTTGTTGTTCTCGGCCAAGTCCTT
AGCCAACCGAAGCACCGTGCCTCCGGCAAAACACCCTTGCTGGTACATCATGAGACGCTTGACGGACGGGCGGAGGCCCAAGAGCTTAGTGAGCTGGTAA
TCAGCCCCGGGCATGTCGACACCACTAGTGGTACAAAAGACCAAGTGGGTGATTTTGGACTTGGGTTGACCCCATTCTTTAATGGCCTTAGTGGCAGCCT
CTTTTCCAAGCTTTGGAATTTC