Detailed information on CNT30646840


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AU11|PKS1_RUBID, E-value = 2e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30330754Rosa chinensisDioscorea rotundata7.7322.6981.43140forward

Expression of CNT30646840

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MPVDGSVTVRKDSLSCRDQLEQRLLNLGQWVRPNNNRRSTITEQGLAHKTIKMSVARPTESHGTQLHEDARQWLRHYQGG*

>peptide 2 (29 aa)
MLLKRQLAHSHYLQLRFSSALVCGLKDLS*

>peptide 3 (29 aa)
ERSQVCSSYERSQIHRYVVLITLIIFACY*

>peptide 4 (38 aa)
MIFRDVANAHILAFENPSLLSIFWESKLLTKLQELLII*

>peptide 5 (47 aa)
MWNNIIHHYIYCYIGQASKFTSECPIEIHQKKKSKNGNLAKKVEWKQ*

>peptide 6 (71 aa)
MLPYSDNICLVASNFSGLRPNLASTWSKIAGPPGCAIQNSEFQSVIFKGLKASLRLFSTFLEISPGTSLRR*

>peptide 7 (66 aa)
MPVNGSVTIREDSLSCRDQLEQRLLNLRQWVGPNNNGRSTITEQGLAHKTIEMSVARPTESHGSDL*

Sequence

>CNT30646840
TGAAAGATCACAGGTATGTAGTTCTTATGAACGATCACAGATTCACAGGTATGTAGTTCTTATAACTCTAATTATTTTTGCATGCTATTAATTTATGTTG
TTTCCTGGTTTTGCTTAGGATACCGCTTCTAATAAGAACATAATTGGACAAACCTTATTGCTTTCATGCTATTGAAAAGACAATTGGCGCATTCTCACTA
CTTGCAACTTCGGTTTTCATCAGCTTTGGTGTGTGGTCTCAAAGATCTTAGCTGAGGAAGCTGCTTGGGAATTTGCAAAACAAAACAGAATTGATATGTT
TACACTTACAGTACATGCATGAATAGTGAGTAGCCTTCTCCGATAGCCAACTGTGAACACAAGCATGGAGCCCCTTCTAAGACTCATAAACGGTACAATA
AAGAAGGATCTCTCATAGATGGGATGATATTTAGAGATGTTGCAAACGCACATATTCTAGCATTTGAGAATCCTTCCCTGCTCTCAATCTTCTGGGAAAG
TAAGCTTCTAACTAAATTGCAGGAACTTTTAATCATATGAAATATGTGGAATAACATTATTCATCATTACATATATTGCTACATAGGACAAGCATCTAAG
TTTACCTCAGAATGCCCAATTGAAATTCACCAGAAAAAAAAATCCAAAAACGGAAACCTAGCCAAGAAAGTAGAGTGGAAACAATAGATATATAAGAACA
AATCCGGGAGCAGATCACCCAAGTGAATCCAGATGCCTTCAAGTCTAAGCAGCCACACTGTGAAGCACGACGGTCTCGACGGTGAGCCCAGGCCCAAACC
CAAATAGAACACCCCACTCTAGCCCTTCTCCAGTGGTCTTGTGCCCATTAGCTGCAGACTTCCTCCTCACCTCGTCCAAAATAAACAACACACAAGCACT
AGACATGTTGCCATACTCGGATAATATATGCCTTGTGGCTTCTAACTTTTCGGGTTTGAGGCCCAATTTAGCCTCTACTTGGTCCAAAATTGCAGGGCCA
CCCGGGTGTGCAATCCAGAATAGTGAGTTCCAGTCCGTGATATTCAAAGGTTTGAAGGCCTCGTTGAGGCTCTTCTCAACGTTCTTAGAAATCAGCCCGG
GAACATCCTTGAGAAGGTGAAATGTGAGCCCAACTTCACGAAGATGCCCGTCGATGGCTCCGTCACTGTCAGGAAGGATAGTTTGAGCTGCCGAGACCAA
CTCGAACAAAGGCTTCTCAACCTCGGGCAATGGGTCAGACCCAACAATAATCGCCGCAGCACCATCACCGAACAAGGCTTGGCCCACAAGACTATCAAGA
TGAGTGTCGCTAGGCCCACGGAAAGTCACGGCACCCAACTTCACGAAGATGCCCGTCAATGGCTCCGTCACTATCAGGGAGGATAGTTTGAGCTGCCGAG
ACCAACTCGAACAAAGGCTTCTCAACCTCAGGCAATGGGTCGGCCCCAACAATAATGGCCGCAGCACCATCACCGAACAAGGCTTGGCCCACAAGACTAT
CGAGATGAGTGTCGCTAGGCCCACGGAAAGTCACGGCAGTGATCTCTGAGCAAACAACAAGAACACGTGCACCTTTGTTGTTCTCGGCCAAGTCCTTAGC
CAACCGGAGCACCGTGCCTCCGGCGAAACACCCTTGTTGGTACATCATGAGACGCTTCACGGACGGGCGGAGACCTAAGAGCTTAGTAAGCTGGTAGTCA
GCCCCGGGCATGTCGACGCCACTAGTGGTACAAAAGACCAAGTGGGTGATTTTGGACTTGGGCTGACCCCATTCCTTAATAGCCTTAGTGGCAGCCTCTT
TTCCAAGCTT