Detailed information on CNT30646608


BLAST search results

BLAST vs Swiss-Prot:
sp|P46286|RL81_ARATH, E-value = 6e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546122Cannabis sativaIpomoea triloba43.1357.184.08201forward
CNT30616186Cannabis sativaSesamum indicum40.3481.3981.91188forward
CNT3086243Cannabis sativaVigna radiata37.3438.9384.48174forward
CNT30440942Cannabis sativaAegilops tauschii21.6746.5490.1101forward
CNT30312036Cannabis sativaCamelina sativa27.4739.0283.59128forward
CNT30721746Cannabis sativaTriticum spelta28.768.3386.57134forward
CNT30338628Cannabis sativaEragrostis tef48.563.6684.51226forward
CNT30367313Cannabis sativaSorghum bicolor32.1926.4183.33150forward
CNT30104724Cannabis sativaOryza rufipogon48.2821.5583.11225forward
CNT30578506Cannabis sativaOryza barthii48.2814.1583.11225forward

Expression of CNT30646608

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MKSSFWCLYRKGVTEGDSGQWGTSSWVVDDVSDHTFQVTIALSEVERPEPGRTLTVVGVGLED*

>peptide 2 (77 aa)
ADNDGVVPRSPSKDTTVTDVVLDVANNGTFRERSERKNITHNEIGLLSTVDELTRVQTLGGDEKLLLVLVPERGDGR*

Sequence

>CNT30646608
GGCTGATAACGACGGCGTAGTCCCCAGAAGCCCTAGCAAGGACACCACGGTCACCGACGTGGTGCTCGACGTTGCAAATAACGGTACCTTCAGGGAGAGA
TCTGAGAGGAAGAACATTACCCACAACGAGATTGGCCTTCTTTCCACAGTAGATGAATTGACCAGAGTACAAACCCTCGGCGGCGATGAAAAGCTCCTTC
TGGTGCTTGTACCGGAAAGGGGTGACGGAAGGTGACTCGGGCCAGTGGGGCACCTCTTCCTGGGTCGTGGATGATGTCAGTGACCACACCTTTCAGGTAA
CCATTGCGCTCTCCGAAGTCGAGAGACCTGAACCTGGCCGGACCCTTACGGTGGTGGGTGTGGGACTTGAAGACTGACCCCGCACCCTTACGCTGCGCAC
GAATGACTCGTCCCATTTCTGAGAGTTAGGTTTTTTTGGGCGGCGACTAAGAAATGAGACACCTCG