CANTATAdb - search

Detailed information on CNT30646476

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004661, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3068134	Cannabis sativa	Leersia perrieri	36.66	83.15	90.03	301	reverse complement

Expression of CNT30646476

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MPLEPKASWFSPKCVEAQQLCGNLGVKHYFGARRESGTKSRQTPDTRYDLKITGVKVGQ*

Sequence

>CNT30646476
CCAGAGTAGCATGGGACCGTGGAATCTGTGTGAATCGGCAGGACCACCTTGCAGGCTAAATACTCTGGGTAGATAGTGAAGTAGTACCGTTGAAGGGTGA
AAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCTCAAGTAGTGGGAGGAGCCCAGGGCTCTGACCGCGTGCCTATTGAAGAATGAG
CCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACTGGAGCTGTAGCGAAAGCGAGTCTCCATAGGGAAATCGTCACTACTTATGGACCCGAACC
TGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCTGAACCGACTGATGTTGAAGAATCAACGGATGAGTTGTGGTTAGGGG
TGAAATGCCACTCGAACCCAAAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGTGTGGAAATCTAGGGGTAAAGCACTATTTCGGTGCG
CGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCCGGACACTAGATATGACCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAG
CTTCATTGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATATAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTT
TGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGTGCCGAAGATGAACGGGGCTAAGCAATCTGCCGAAGCTGTG
GGATGCAAAAATGCATGAGGA