Detailed information on CNT30646316


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Cannabis sativaOryza sativa19.9537.2586.8476reverse complement
CNT30523179Cannabis sativaSetaria italica42.7859.0680.37163reverse complement
CNT3085543Cannabis sativaVigna radiata56.4340.883.72215reverse complement
CNT30555606Cannabis sativaOryza glaberrima27.0312.885.44103forward
CNT30349956Cannabis sativaEragrostis tef26.7739.3888.24102reverse complement
CNT30596976Cannabis sativaOryza meridionalis24.6732.5386.1794reverse complement
CNT30370879Cannabis sativaOryza glumipatula19.9532.986.8476forward
CNT30322630Cannabis sativaAsparagus officinalis24.414.689.2593forward
CNT30103646Cannabis sativaOryza rufipogon24.6712.1486.1794reverse complement
CNT30578343Cannabis sativaOryza barthii20.7316.0688.6179forward
CNT30116624Cannabis sativaOryza nivara20.737.6387.3479forward
CNT30176501Cannabis sativaVigna angularis56.4326.7784.65215forward

Expression of CNT30646316

Peptides detected in this lncRNA

>peptide 1 (81 aa)
LLYTNTPLWLLPGLMTDPTDQHECFQRALSSLTRILGKLPRRSPILEIAPSQARLTVEFFRDGLPKNKMHLVDISSTNQSI*

Sequence

>CNT30646316
GGCTCTTATACACGAATACGCCACTCTGGCTGCTTCCTGGATTGATGACTGACCCTACAGACCAACACGAGTGTTTCCAGCGTGCTTTGTCCTCACTCAC
ACGCATCCTGGGAAAACTTCCCAGGAGGTCACCCATCCTTGAAATTGCTCCAAGCCAAGCACGCTTAACTGTGGAGTTCTTTCGAGATGGGCTACCGAAA
AACAAGATGCACCTTGTTGACATAAGTAGTACCAATCAATCCATTTAAGCTCTCTTCAACTGTGTAGTCCCATACCTACACAGTCTCAGAATCATCCTGC
TTGACCTTCCCCAAGCGGTGTGGGATTGTACAGCTTACCCGGTGTTTCCCCTTACGGATCACGGGACTACTGACTGTCACA