Detailed information on CNT30646246


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Cannabis sativaSetaria viridis82.0312.9288.84242reverse complement
CNT30272810Cannabis sativaChenopodium quinoa20.6816.495.0861reverse complement
CNT30708350Cannabis sativaGlycine max47.817.6589.36141reverse complement
CNT30556102Cannabis sativaOryza glaberrima78.3137.7589.18231reverse complement
CNT30610339Cannabis sativaGossypium raimondii70.8562.7689.47209forward
CNT30318962Cannabis sativaAsparagus officinalis10014.1589.15295reverse complement
CNT30575379Cannabis sativaOryza barthii78.3153.686.58231forward
CNT30116753Cannabis sativaOryza nivara78.3157.6189.18231reverse complement
CNT30726606Cannabis sativaLupinus angustifolius78.6419.6891.81232reverse complement

Expression of CNT30646246

Peptides detected in this lncRNA

>peptide 1 (79 aa)
YFHAFLEGLEKVAINREKNLSFRKKERKNLFSFRRDQEIGSSRKKNAWLINNSLLGLRPPQSLRAPQINAMGCVYLSIS*

>peptide 2 (49 aa)
FIFMLFSKVWRKLQSIGKKTSLSERKNVKIFFLSAGTKRLDLAVRRMLG*

Sequence

>CNT30646246
TTTATTTTCATGCTTTTCTCGAAGGTCTGGAGAAAGTTGCAATCAATAGGGAAAAAAACCTCTCTTTCCGAAAGAAAGAACGTAAAAATCTTTTTTCTTT
CCGCAGGGACCAAGAGATTGGATCTAGCCGTAAGAAGAATGCTTGGCTGATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCACTACGAGCGCCC
CAGATCAATGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGAGAGCAGGTTTGAAAAAGGATCTTAGAGTGTCTAGGATTGGGCC