Detailed information on CNT30646125


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Cannabis sativaOryza sativa23.367.3282.52103forward
CNT30673559Cannabis sativaSetaria viridis14.9723.2486.3666reverse complement
CNT30201933Cannabis sativaPisum sativum23.136.7283.33102forward
CNT30100129Cannabis sativaOryza rufipogon23.139.7183.33102reverse complement

Expression of CNT30646125

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLSPEGSEHRKVKESSQDKVCNTIYQVCHNLMMHSFIFPFREPGSRDKRIKDTNQKD*

>peptide 2 (51 aa)
RIFGSITFGPLLEKPATEGAGLVCNTVLAGMIYALAFFVDMMYLRTFMALL*

Sequence

>CNT30646125
TGAGAATATTCGGCTCTATAACATTTGGACCCCTGCTAGAGAAGCCGGCAACAGAAGGTGCTGGTTTGGTATGTAACACAGTCCTTGCTGGCATGATATA
TGCTCTTGCATTCTTTGTTGACATGATGTACTTGAGAACTTTCATGGCATTGTTGTAAGTCAATGCTGTCGCCGGAAGGAAGTGAGCATCGCAAGGTGAA
AGAGAGTTCTCAAGACAAAGTCTGCAACACAATTTATCAGGTTTGTCATAATCTTATGATGCATTCTTTTATTTTTCCATTTCGGGAACCAGGTTCTAGA
GATAAGAGAATTAAGGATACCAACCAGAAAGATTAACGCAACCATAAGGAAAAACAAATACAACGAGTTAACTAATCAGTAAGATTGATGAAGTAGCAAT
TAACGCAAAAACAACGAATTGGAAAGCAATAGTCATGTTTC