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Detailed information on CNT30646085


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615873Cannabis sativaSesamum indicum27.9827.9890.16122reverse complement
CNT30402011Cannabis sativaBeta vulgaris34.8625.8990.13152reverse complement
CNT30493658Cannabis sativaOlea europaea27.0613.8795.76118reverse complement
CNT30177674Cannabis sativaSecale cereale34.47.3990150reverse complement
CNT30221081Cannabis sativaHordeum vulgare34.47.4188.67150forward
CNT30384202Cannabis sativaTriticum turgidum28.677.5589.6125reverse complement
CNT30627901Cannabis sativaDaucus carota58.4921.7994.12255reverse complement
CNT30595932Cannabis sativaOryza meridionalis34.411.2992150reverse complement
CNT30318666Cannabis sativaAsparagus officinalis55.527.5392.56242forward
CNT30148380Cannabis sativaBrachypodium distachyon34.411.0691.33150reverse complement

Expression of CNT30646085

Peptides detected in this lncRNA

>peptide 1 (30 aa)
EKKKVFERKDGRGVYQGFPENTRIDIIKCM*

Sequence

>CNT30646085
GAGAAGAAGAAGGTTTTTGAAAGAAAAGATGGTAGAGGAGTCTATCAGGGGTTTCCTGAGAATACACGAATCGATATTATAAAATGTATGTGATTCGATA
ATTTTTCGTGTGTTCTCAGGTCGCCCCTGCTAGATTTTTTTTCTACTATTAAATTGTTTTGGATGAGATAAGCAAATATTGTTCAGGGAGAGCTAATGCT
TGTTGGGTATTTTAGTTTGACACTGCTTCACACCCAAAAAGAAGCGAGCTACGTCTGAGTTAAACTTGGATATGGAAGTCTTCTTTCGTTTCTCGACGGT
GAAGTAAGACTAAGCTCATGAGCTTATTATCCTAGGTCGGAACAAGTTGATAGGATCCCCTTTTTTACGTCCCCATGTCCCTCCCGTGTGGCGACGTGGG
GGCGTAAAAAAGGAAAGAGAGGGATGGGGTTTCTCT