Detailed information on CNT30645967


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SLN8|DBR_TOBAC, E-value = 2e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702461Cannabis sativaQuercus lobata38.4220.6382.44131forward
CNT30631797Cannabis sativaVigna unguiculata35.1924.982.5120forward
CNT3087529Cannabis sativaVigna radiata41.0627.0382.14140forward

Expression of CNT30645967

Peptides detected in this lncRNA

>peptide 1 (30 aa)
HPLKSPTKAFGALFSPSAISSTYTIFPSFK*

Sequence

>CNT30645967
CATCCATTGAAGAGCCCTACCAAAGCTTTTGGGGCACTCTTTAGCCCTTCAGCTATATCTTCAACATACACAATTTTTCCTTCTTTTAAGTAAGGCATAA
CATATTCGAGAAATTTTGGGTATAGGTGGTAATAGTCAGCAACCAAAAATCCAACCATTCGAGCACTTTTCCACACAAGATTCGTCAGATTATGTACACC
TTCAGTTTGTTCAAGGTTGTACTGTGAGATCATTCCACAAACAGAAATTCGAGCATGGCTTCTCATGTTTTGTAGAACAGCATCTAGCAGCTTTCCCCCA
ACATTATCAAAGTATATATCTATACCTTCTGGAAAATACCT