Detailed information on CNT30645276


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 3e-52

BLAST vs NONCODE:
NONGMAT000508, E-value = 2e-76

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546681Cannabis sativaIpomoea triloba47.0454.0481.5254forward
CNT3069058Cannabis sativaQuercus suber52.2232.2384.75282forward
CNT30172567Cannabis sativaTrifolium pratense58.746.4880.13317forward
CNT30261175Cannabis sativaBrassica rapa53.8961.6580.76291forward
CNT30211318Cannabis sativaHelianthus annuus54.0775.0681.16292forward
CNT3024855Cannabis sativaPopulus trichocarpa44.2640.7280.33239forward
CNT30331117Cannabis sativaDioscorea rotundata38.722.0780.86209forward

Expression of CNT30645276

Peptides detected in this lncRNA

>peptide 1 (45 aa)
PDRENEYQNSLIQSKIGISYSMYKNSRLKSKHFQKLNSLYKSQKQ*

>peptide 2 (53 aa)
MRPLIRLTPPRLAKRRIAGLVIPWMLSLRTLRCLFAPPFPKPFPPLPLPDIFK*

Sequence

>CNT30645276
TTCCAGATAGGGAAAATGAATATCAAAATTCTTTGATTCAATCCAAAATAGGCATTTCATATTCAATGTACAAGAACTCAAGATTGAAATCTAAGCATTT
CCAAAAGCTTAATTCCCTTTACAAATCTCAAAAACAATAATTATAAACACTAAAAAGATTAAAGCATTGACTGACTCACACTAATCAACCTCCGAATCCG
TACAGAGTACGGCCTTGTCTCTTCAAAGCATAGACGACGTCCATGGCGGTAACAGTCTTCCGGCGAGCGTGCTCAGTGTAAGTAACGGCGTCACGGATGA
CGTTCTCTAGAAAGATCTTGAGTACGCCACGTGTCTCCTCGTAGATGAGACCGCTGATACGCTTAACACCGCCACGCCTGGCCAAACGGCGGATCGCCGG
CTTGGTGATCCCTTGGATGTTGTCCCTGAGAACCTTGCGATGCCTCTTTGCTCCTCCCTTTCCCAAACCCTTTCCTCCTTTGCCTCTTCCTGACATTTTC
AAATGATCTTGGTTGTCTTCTTCTTCTTCTTCGTTTGAAG