Detailed information on CNT30645213


BLAST search results

BLAST vs Swiss-Prot:
sp|O24534|EF1A_VICFA, E-value = 1e-24

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673182Cannabis sativaSetaria viridis61.7528.8290.3134forward
CNT30698284Cannabis sativaQuercus lobata53.4640.5690.52116forward
CNT30450104Cannabis sativaSaccharum spontaneum42.422.0688.0492forward
CNT30218533Cannabis sativaKalanchoe fedtschenkoi51.1521.3588.29111forward
CNT30483063Cannabis sativaChara braunii42.8641.1590.3293forward
CNT30585568Cannabis sativaEchinochloa crusgalli43.7818.5289.4795forward

Expression of CNT30645213

Peptides detected in this lncRNA

>peptide 1 (40 aa)
VSTTMGLVGTILTIPASPFFKNFASFSNLSITRLSIPPSL*

>peptide 2 (70 aa)
FNHHGLGWNHLNHTCITILQELCFLLKPLNHTLVNSSKLIDKVTSGGRLAGVDMADDHDVDVDLFLSHFES

Sequence

>CNT30645213
GTTTCAACCACCATGGGCTTGGTTGGAACCATCTTAACCATACCTGCATCACCATTCTTCAAGAACTTTGCTTCCTTCTCAAACCTCTCAATCACACGCT
TGTCAATTCCTCCAAGCTTATAGATAAGGTGACCAGTGGTGGTCGACTTGCCGGAGTCGACATGGCCGATGACCACGATGTTGATGTGGATCTTTTCCTT
TCCCATTTCGAATCAAA