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Detailed information on CNT30645210


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RVK9|CHS_CANSA, E-value = 1e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381108Cannabis sativaManihot esculenta15.1920.6181.74115forward
CNT30195932Cannabis sativaPisum sativum46.7656.1979.94354forward
CNT30485883Cannabis sativaOlea europaea8.9823.4586.7668forward
CNT30507146Cannabis sativaNicotiana attenuata31.5722.4679.5239forward
CNT3096581Cannabis sativaSolanum tuberosum36.0614.6183.52273forward
CNT30171320Cannabis sativaTrifolium pratense49.1486.9280.11372forward
CNT30597791Cannabis sativaFraxinus excelsior14.5336.7986.36110forward
CNT30705527Cannabis sativaPrunus avium19.4231.7583.67147forward
CNT3030385Cannabis sativaTheobroma cacao12.9524.5682.6598forward
CNT3022855Cannabis sativaPopulus trichocarpa32.135.0684.77243forward

Expression of CNT30645210

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGFSTSGIGSDPTIKAAEPSPNRAWPTKSNSSNFRTNNQYTSTFVIFSQIFG*

>peptide 2 (51 aa)
MSTPLVVQNTKWVIFDLGWPHSLMAFVAASLPNLGTSTTTISCLASNDGAS*

>peptide 3 (43 aa)
MTINSTITIRKYSLGRRDQFKNGLFNFRNWVRPNNQSSRTITK*

>peptide 4 (31 aa)
TNRKMTQIQTSSKKTQEESNGLCGPTKSPLK*

Sequence

>CNT30645210
TCACCAATCGCAAAATGACCCAAATACAAACAAGTTCAAAGAAAACACAAGAAGAAAGCAATGGGCTGTGTGGGCCCACTAAAAGCCCATTAAAGTAATA
TATAATCTAAATAGCCACACTGTGAAGGACCACAGTTTCAACAGTGAGGCCAGGAACATCTTTAAGCAAATGAAAAGTAAGCCCAACTTCACGTAAATGA
CCATCAATAGCACCATCACTATCAGGAAGTATAGTTTGGGCCGCAGAGACCAATTCAAAAATGGGCTTTTCAACTTCAGGAATTGGGTCAGACCCAACAA
TCAAAGCAGCCGAACCATCACCAAATAGGGCCTGGCCCACGAAAAGTAACAGCAGTAATTTCAGAACAAACAACCAATACACGAGCACCTTTGTTATTTT
CAGCCAAATCTTTGGCTAAACGAAGAACAGTTCCACCAGCAAAACAACCTTGTTGATACATCATCAAACGTTTGACTGATGGTCTAAGGCCCAATAACTT
AGTGAGCTGGTAATCAGCACCAGGCATGTCCACACCACTAGTGGTACAAAATACCAAATGGGTTATCTTTGATTTGGGCTGGCCCCATTCTTTGATGGCC
TTTGTAGCAGCCTCTTTACCCAATTTAGGTACTTCAACAACAACCATATCTTGTCTTGCATCCAATGATGGTGCCTCATAAGCACAAAGATTTGGATTTT
CTTTGAGAATCTCCTCAGTTAAATGCATGTAACGTTTTCTAATCATGGATTTGTCAC