Detailed information on CNT30645139


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 1e-50

BLAST vs NONCODE:
NONMEST004097, E-value = 4e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672783Cannabis sativaSetaria viridis82.2545.6792.07227forward
CNT30546688Cannabis sativaIpomoea triloba85.1454.6592.77235forward
CNT30730167Cannabis sativaCorchorus capsularis85.1430.0593.62235forward
CNT30380192Cannabis sativaManihot esculenta85.1410.395.32235forward
CNT30195181Cannabis sativaPisum sativum84.4249.1693.56233forward
CNT30712097Cannabis sativaGlycine max82.2519.0387.67227forward
CNT30160107Cannabis sativaPistacia vera82.2550.7892.95227forward
CNT3093993Cannabis sativaSolanum tuberosum85.1445.0290.21235forward
CNT30288144Cannabis sativaTriticum aestivum85.1463.5190.21235forward
CNT30386294Cannabis sativaTriticum turgidum85.1463.8690.21235forward
CNT30562819Cannabis sativaActinidia chinensis82.2545.0492.95227forward
CNT3084119Cannabis sativaVigna radiata81.1612.5889.73224forward
CNT30233912Cannabis sativaBrassica oleracea72.4689.2991200forward
CNT30658093Cannabis sativaTriticum dicoccoides85.1453.7890.21235forward
CNT30312075Cannabis sativaCamelina sativa90.5844.4889.6250forward
CNT30614135Cannabis sativaArabis alpina85.1415.0691.49235forward
CNT30137210Cannabis sativaLolium perenne27.178.318875reverse complement
CNT30608684Cannabis sativaGossypium raimondii85.1455.8291.06235forward
CNT3067093Cannabis sativaLeersia perrieri65.9440.7291.21182forward
CNT30646927Cannabis sativaRosa chinensis87.6872.0292.56242forward
CNT30689637Cannabis sativaTriticum urartu84.4223.8790.13233forward
CNT30721809Cannabis sativaTriticum spelta85.1415.5791.49235forward
CNT30338600Cannabis sativaEragrostis tef82.2547.2988.99227forward
CNT30480842Cannabis sativaArabidopsis halleri67.0337.9991.35185forward
CNT30363108Cannabis sativaSorghum bicolor82.2528.3889.43227forward
CNT30423787Cannabis sativaPapaver somniferum85.1412.6192.77235forward
CNT3031228Cannabis sativaTheobroma cacao40.5845.1691.96112forward
CNT30323623Cannabis sativaAsparagus officinalis37.3233.0187.38103forward
CNT30120727Cannabis sativaCitrus clementina85.1442.7391.49235forward
CNT30101083Cannabis sativaOryza rufipogon82.2542.5189.43227forward
CNT30116334Cannabis sativaOryza nivara85.1438.5289.79235forward
CNT30594327Cannabis sativaEragrostis curvula64.8650.5688.27179forward
CNT30726347Cannabis sativaLupinus angustifolius84.4248.8590.56233forward

Expression of CNT30645139

Peptides detected in this lncRNA

>peptide 1 (65 aa)
LSGQTGGSKGDNHTSNHVLDKVTMARSINDCAVVLGGLKLPQGNVNGDTTLTLSLKLVKNPSILE*

>peptide 2 (32 aa)
SVVRPVGAKVTTIPVIMFLIKSRWPGASMTVQ*

>peptide 3 (46 aa)
MSMVIPRSRSALSLSRTQAYLNDLLFISAASFSNLSITRLSIPPSL*

Sequence

>CNT30645139
CTCAGTGGTCAGACCGGTGGGAGCAAAGGTGACAACCATACCAGTAATCATGTTCTTGATAAAGTCACGATGGCCAGGAGCATCAATGACTGTGCAGTAG
TACTTGGTGGTCTCAAACTTCCACAGGGCAATGTCAATGGTGATACCACGCTCACGCTCAGCCTTAAGCTTGTCAAGAACCCAAGCATACTTGAATGACC
TCTTGTTCATCTCAGCAGCTTCCTTCTCAAACCTCTCAATCACACGCTTGTCAATTCCTCCAAGCTTATAGATAAG