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Detailed information on CNT30645006


BLAST search results

BLAST vs Swiss-Prot:
sp|O23255|SAHH1_ARATH, E-value = 1e-126

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702258Cannabis sativaQuercus lobata19.8134.6885.28163forward
CNT30375086Cannabis sativaArabidopsis thaliana19.5622.4583.23161forward
CNT30380227Cannabis sativaManihot esculenta14.0927.8282.76116forward
CNT30628366Cannabis sativaVigna unguiculata22.4812.9582.16185forward
CNT30200315Cannabis sativaPisum sativum19.8131.5988.34163forward
CNT30505192Cannabis sativaNicotiana attenuata19.5628.584.47161forward
CNT3096327Cannabis sativaSolanum tuberosum73.6376.2382.51606forward
CNT30585997Cannabis sativaMusa acuminata9.2330.0485.5376forward
CNT30511017Cannabis sativaSolanum lycopersicum54.1974.8383.18446forward
CNT30144739Cannabis sativaMedicago truncatula29.8953.0285.37246forward
CNT30435910Cannabis sativaAegilops tauschii25.7626.678.77212forward
CNT30659902Cannabis sativaTriticum dicoccoides9.7225.9786.2580forward
CNT30312478Cannabis sativaCamelina sativa13.3745.0891.82110forward
CNT3076654Cannabis sativaBrassica juncea17.2530.4188.03142forward
CNT30612249Cannabis sativaArabis alpina10.6933.7286.3688forward
CNT30651401Cannabis sativaRosa chinensis7.1722.0188.1459forward
CNT30720265Cannabis sativaTriticum spelta12.6438.2484.62104forward
CNT30365203Cannabis sativaSorghum bicolor19.5674.8881.37161forward
CNT30358619Cannabis sativaLactuca sativa32.4458.5584.27267forward
CNT30570586Cannabis sativaVitis vinifera23.0927.5481.05190forward
CNT3021984Cannabis sativaPopulus trichocarpa66.9525.7682.21551forward
CNT30723196Cannabis sativaLupinus angustifolius19.4420.0889.38160forward

Expression of CNT30645006

Peptides detected in this lncRNA

>peptide 1 (52 aa)
LVNEQDMTKLGCPVAQPKFIKRPSAKTMIPTLVSGKTHLSVCGLMVILLTPG*

>peptide 2 (45 aa)
MNQKRSITTIINNQIWTTTWTPIKSTLSTPPILLKSLTFPSKNSS*

>peptide 3 (35 aa)
MAEMDRIQYGTRRDLAFRPPRVRSRDDRNRPEKGP*

Sequence

>CNT30645006
GGTTGGTGAATGAGCAAGACATGACGAAACTAGGGTGTCCGGTGGCACAACCCAAGTTCATCAAACGTCCCTCGGCCAAGACAATGATACCGACGTTGGT
CTCGGGGAAGACCCACCTGTCGGTTTGTGGCTTGATGGTGATTCTCTTAACACCAGGGTAGTTTCTTCAGAAACACCAACAAGTCTATCCTTCATCTTGT
GGTATCTCTTAGGATCAGTCTTCAAACCTTCCTTAATAATCCCAAGAACAAGTTGAAACTCAACATTATCAGTAGAAGTAGGATCAGGCAACTGACCAGT
CTTTTCATAGATCTCCTCAGCCTTAACTCCCTCATGAATCAAAAGCGTAGCATCACCACCATCATCAACAATCAGATCTGGACCACCACCTGGACCCCAA
TCAAGAGCACGCTCAGTACACCACCAATACTCTTGAAGAGTCTCACCTTTCCAAGCAAAAACAGCAGCTGAATCACGAGCTATGGCGGCCGCAGCGTGAT
CCTGAGTCGAGAAAATGTTGCAGGAGCACCATCTCACCTCAGCACCGAGTGCGGTTAGGGTTTCGATAAGAACAGCAGTCTGAATAGTCATGTGAAGAGA
ACCAGTGATTCTGGCTCCCTTAAATGGCTGAGATGGACCGAATTCAGTACGGCACGAGACGAGACCTGGCATTTCGACCTCCGCGAGTTCGATCTCGAGA
CGACCGAAATCGGCCTGAGAAAGGTCCTTGACCTTGTATTCACGGCCGGCGGTGGTTTTCTCGACGGAGAGAGACATGTTTTCAGATCTGATCTGAGCTC
TGATTCGATCTGAGAAGAGAGAG