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Detailed information on CNT30644974


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RVK9|CHS_CANSA, E-value = 2e-151

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Cannabis sativaQuercus lobata32.6362.2385.5262forward
CNT30524897Cannabis sativaPhaseolus vulgaris27.1535.580.73218forward
CNT30628726Cannabis sativaVigna unguiculata53.4239.0779.95429forward
CNT3045136Cannabis sativaPrunus dulcis45.5858.8480.33366forward
CNT30156272Cannabis sativaPistacia vera66.8734.8281.75537forward
CNT30564018Cannabis sativaActinidia chinensis22.6725.6383.52182forward
CNT3087878Cannabis sativaVigna radiata44.3322.7878.09356forward
CNT30145784Cannabis sativaMedicago truncatula42.8431.7381.69344forward
CNT30606850Cannabis sativaGossypium raimondii43.7140.381.77351forward
CNT30646903Cannabis sativaRosa chinensis59.6536.2381.21479forward
CNT30355633Cannabis sativaLactuca sativa33.7549.6381.55271forward
CNT30151821Cannabis sativaPrunus persica45.5863.5479.78366forward
CNT30114121Cannabis sativaFicus carica78.739.1180.7632forward

Expression of CNT30644974

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MTINSTITIRKYSLGRRDQFKNGLFNFRNWVRPNNQSSRTITK*

>peptide 2 (31 aa)
HRITNHQSQNDPNTNKFKENTRRKQWAVWAH*

>peptide 3 (32 aa)
MGIIRPTKSNSSNFRTNNQYTSTFVIFSQIFG*

>peptide 4 (36 aa)
TESQITNRKMTQIQTSSKKTQEESNGLCGPTKSPLK*

>peptide 5 (51 aa)
MSTPLVVQNTKWVIFDLGWPHSLMAFVAASLPNLGTSTTTISCLASNDGAS*

>peptide 6 (75 aa)
MGFSTSGIGSDPTIKAAEPSPNRAWPTRLSRWVSLGPRKVTAVISEQTTNTRAPLLFSAKSLAKRRTVPPAKQPC*

Sequence

>CNT30644974
CACAGAATCACAAATCACCAATCGCAAAATGACCCAAATACAAACAAGTTCAAAGAAAACACAAGAAGAAAGCAATGGGCTGTGTGGGCCCACTAAAAGC
CCATTAAAGTAATATATAATCTAAATAGCCACACTGTGAAGGACCACAGTTTCAACAGTGAGGCCAGGAACATCTTTAAGCAAATGAAAAGTAAGCCCAA
CTTCACGTAAATGACCATCAATAGCACCATCACTATCAGGAAGTATAGTTTGGGCCGCAGAGACCAATTCAAAAATGGGCTTTTCAACTTCAGGAATTGG
GTCAGACCCAACAATCAAAGCAGCCGAACCATCACCAAATAGGGCCTGGCCCACAAGACTATCGAGATGGGTATCATTAGGCCCACGAAAAGTAACAGCA
GTAATTTCAGAACAAACAACCAATACACGAGCACCTTTGTTATTTTCAGCCAAATCTTTGGCTAAACGAAGAACAGTTCCACCAGCAAAACAACCTTGTT
GATACATCATCAAACGTTTGACTGATGGTCTAAGGCCCAATAACTTAGTGAGCTGGTAATCAGCACCAGGCATGTCCACACCACTAGTGGTACAAAATAC
CAAATGGGTTATCTTTGATTTGGGCTGGCCCCATTCTTTGATGGCCTTTGTAGCAGCCTCTTTACCCAATTTAGGTACTTCAACAACAACCATATCTTGT
CTTGCATCCAATGATGGTGCCTCATAAGCACAAAGATTTGGATTTTCTTTGAGAATCTCCTCAGTTAAATGCATGTAACGTTTTCTAATCATGGATTTGT
CAC