Detailed information on CNT30644907


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT003666, E-value = 3e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30266045Cannabis sativaBrassica rapa24.3625.7392.98114reverse complement
CNT30627927Cannabis sativaDaucus carota19.2326.0994.4490forward

Expression of CNT30644907

Peptides detected in this lncRNA

>peptide 1 (37 aa)
SCKFLLPLDHLYLYALGSRFMDLSVREIKIRGSNHFF*

>peptide 2 (42 aa)
MLVDHIFHYSSMIQSIVSSADSSTSVGSDLHLVSPKLHPGHG*

>peptide 3 (34 aa)
MSVGSFFNRHAVLGSSHCLGAYGFMFNFTPRWGFF

>peptide 4 (35 aa)
MDRSPRFGSISSDNCPMKTSFSSRSVGSLNQATCL*

Sequence

>CNT30644907
GTTCCTGTAAATTCTTGCTCCCATTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGGATCTCTCGGTTCGAGAAATAAAAATAAGAGGATC
GAACCATTTCTTCTGACTCTTTTTCAAATTTGAGAAATGTTGGTTGATCATATATTTCATTATAGTTCTATGATTCAGAGTATCGTTTCCTCCGCTGATT
CTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATT
GCCCTATGAAGACTAGCTTTAGCTCACGCTCGGTGGGTTCCCTTAACCAAGCCACTTGCCTATGAGTGTAGGCTCATTCTTCAACAGGCACGCGGTCCTG
GGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCAATTTCACTCCCCGATGGGGGTTCTTTTT