« Back to Cannabis sativa search


Detailed information on CNT30644824


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-48

BLAST vs NONCODE:
NONGMAT000508, E-value = 4e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318271Cannabis sativaCorylus avellana26.6625.9182.49257forward
CNT30616210Cannabis sativaSesamum indicum28.0121.5885.56270forward
CNT30197530Cannabis sativaPisum sativum31.3338.3283.44302forward
CNT3086297Cannabis sativaVigna radiata27.5922.8785.71266forward
CNT3082467Cannabis sativaBrassica juncea27.5937.184.21266forward
CNT30611328Cannabis sativaArabis alpina18.4639.0482.02178forward
CNT30357929Cannabis sativaLactuca sativa31.3367.4186.75302forward

Expression of CNT30644824

Peptides detected in this lncRNA

>peptide 1 (58 aa)
LLSCDHYLKWTLQFSPITFMGSHNGPDIQLRRPFFSNIFLSSIYHLFINSLKNNQFLN*

>peptide 2 (29 aa)
MLSLRTLRCLLAPPFPKPFPPFPLPDIFG*

Sequence

>CNT30644824
CTCCTCTCATGCGATCATTATTTGAAATGGACTTTACAATTTAGCCCAATCACTTTTATGGGCTCCCATAATGGGCCTGATATTCAACTACGAAGGCCTT
TTTTCTCTAATATCTTTCTTTCTTCAATTTACCATTTATTCATCAATTCTTTGAAAAATAATCAATTTCTTAACTGACTCCAAACAGAACAGTAAATTCC
AGATAGGGAAAATGAATATCAAAATTCTTTGATTCAATCCAAAATAGGCATTTCATATTCAATGTACAAGAACTCAAGATTGAAATCTGAGCATTTCCAA
TAGCTTAATCCCAATTGCAAATCTCAGAAACAATAATTATAAACCCTAAAAAGATTAAAGCATTGACTGACTCACACTCATCAACCTCCGAATCCGTACA
GAGTACGGCCTTGTCTCTTCAAAGCATAGACGACGTCCATGGCGGTAACAGTCTTCCGGCGAGCGTGCTCAGTGTAAGTGAGGGCGTCACGGATAACGTT
CTCAAGAAAGATCTTAAGTACACCGCGAGTCTCCTCGTAGATGAGACCGCTGATACGCTTAACGCCGCCACGTCTGGCCAAACGGCGAATCGCCGGCTTG
GTGATTCCCTAGATGTTGTCCCTGAGAACCTTACGATGCCTCTTGGCTCCTCCCTTTCCCAAACCCTTTCCTCCTTTTCCTCTTCCTGACATTTTCGGAT
GATCTAACTTTCTCTCTCTAGAAACTTCAGTGTTCTTCTGTCTCTCTCTAGATAGCTAGTTGTTGACTTAGTCAGTTTGGGGAATGTTTATAAATGTGGG
GAAGTTATTCGTGAACCGTTGGATCAGGTCACGATCCGCGTGTAGAGCTAGCTTGGCTTAGGAACCGTTGGATTTGTTTAATTCGGATCGGTGAAAGTTT
GAAGTTTCCATAAAAATGCGCGAAAGTTTAGTGAATGAGTGACTAGACCGTATTTGTCTATGGC