Detailed information on CNT30644762


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632291Cannabis sativaVigna unguiculata21.269.6786.8191forward
CNT30504293Cannabis sativaNicotiana attenuata37.386.3391.25160forward
CNT30597766Cannabis sativaFraxinus excelsior37.8533.4791.98162forward
CNT30203008Cannabis sativaHelianthus annuus37.8514.7190.12162reverse complement
CNT3057113Cannabis sativaAmborella trichopoda33.645.0186.11144forward
CNT3039143Cannabis sativaCucumis melo56.7821.8585.19243reverse complement

Expression of CNT30644762

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MKINHRPYILEFYIISSFFLYFSHLFIYPHTLTFIVSLLLIN

>peptide 2 (29 aa)
MHLRLQDFEKVFCLIRDQFSINALLHFSL*

Sequence

>CNT30644762
CAAGCCAACCATAAATTATTTGAATTGCTAATATTAATTTGTATACACCCTAAAAAATATATTTAAGTGCACTTCATTGCATTTCCTGCTCTAAATTTTT
GATAATTCAATTAATCTTTCTTGGGCGAAAAGGAGGATATCTCGATCGGGGAAGAGAACGGGAAAATACCATATGACCCAATATATTTGACAAATCGCAC
TATACGTCAACCCACGATGCATCTTCGTCTCCAGGACTTCGAAAAGGTATTTTGTTTAATTAGGGATCAATTCAGTATTAATGCTTTATTACATTTTTCT
TTATGAAAATTAATCATAGACCTTACATATTGGAATTTTATATCATTAGTAGTTTTTTTCTCTATTTCTCTCATCTTTTCATTTATCCGCACACTTTAAC
TTTTATTGTTTCACTACTCCTAATCAAT