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Detailed information on CNT30644515


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41385|PSAL_SPIOL, E-value = 3e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533721Cannabis sativaEucalyptus grandis54.8445.4280.13317forward
CNT30516978Cannabis sativaJuglans regia52.9444.8780.72306forward
CNT30698134Cannabis sativaQuercus lobata67.320.8783.8389forward
CNT30376279Cannabis sativaArabidopsis thaliana31.6630.781.42183forward
CNT3021623Cannabis sativaCitrullus lanatus64.5327.4779.36373forward
CNT30730016Cannabis sativaCorchorus capsularis22.8419.9488.64132forward
CNT30629841Cannabis sativaVigna unguiculata20.242087.18117forward
CNT30507461Cannabis sativaNicotiana attenuata43.9470.1780.71254forward
CNT30710011Cannabis sativaGlycine max22.3229.8686.05129forward
CNT3042792Cannabis sativaPrunus dulcis23.737.1389.05137forward
CNT30635301Cannabis sativaCapsicum annuum45.1665.7483.52261forward
CNT3094038Cannabis sativaSolanum tuberosum45.3342.0581.3262forward
CNT30560479Cannabis sativaActinidia chinensis37.7220.782.11218forward
CNT3084834Cannabis sativaVigna radiata17.4726.2388.12101forward
CNT30172489Cannabis sativaTrifolium pratense21.979.8582.68127forward
CNT3075006Cannabis sativaBrassica juncea22.6629.1183.21131forward
CNT30261201Cannabis sativaBrassica rapa30.820.0582.02178forward
CNT30614377Cannabis sativaArabis alpina18.5141.3184.11107forward
CNT30454500Cannabis sativaSaccharum spontaneum23.0136.7481.2133forward
CNT304795Cannabis sativaZea mays23.0129.4281.95133forward
CNT30610860Cannabis sativaGossypium raimondii16.0931.5387.193forward
CNT30217087Cannabis sativaKalanchoe fedtschenkoi53.2929.6477.92308forward
CNT30129085Cannabis sativaCorymbia citriodora38.7521.2779.02224forward
CNT30344813Cannabis sativaEragrostis tef19.921.9982.61115forward
CNT30620323Cannabis sativaCajanus cajan64.0120.7180.54370forward
CNT30360483Cannabis sativaLactuca sativa53.817181.99311forward
CNT30154501Cannabis sativaPrunus persica25.7847.7683.22149forward
CNT30570425Cannabis sativaVitis vinifera37.3712.4385.19216forward
CNT3027985Cannabis sativaTheobroma cacao67.371.6482.01389forward
CNT3037832Cannabis sativaCucumis melo38.7526.680.36224forward
CNT30112090Cannabis sativaFicus carica46.1913.0486.89267forward
CNT30725036Cannabis sativaLupinus angustifolius20.7618.6387.5120forward
CNT3049017Cannabis sativaCucumis sativus38.7522.8379.02224forward

Expression of CNT30644515

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MKQLHTLSSKCLGSQQVQLQPMTQLHLHRVCSSKAQLSQMGPPGETHGPSPPQFPSEVGSLRSGMLGGWIGELLRVGKK*

>peptide 2 (35 aa)
MDGSPSLNEATPYIVKQMLRITTSPAAANDPAPPA*

>peptide 3 (34 aa)
MIMPFAPLTYTFTYTTKKINKKTVQVSMRSCRDPN

>peptide 4 (51 aa)
VSLFKVVGKIKDIEEEESPSNTGNSTEEESTGELGPSLGGLELIRLLLPPS*

Sequence

>CNT30644515
GTGTCTCTATTTAAAGTAGTAGGGAAGATCAAGGACATAGAGGAGGAAGAAAGCCCAAGTAACACCGGAAATTCCACCGAAGAAGAATCCACCGGTGAAC
TTGGCCCATCCCTCGGCGGTTTGGAGCTGATCAGGCTCCTTCTTCCTCCCAGTTAGGGTCAAAGAAGGAGCAATGGATGGCTCACCTTCCTTGAATGAAG
CAACTCCATACATTGTCAAGCAAATGCTTAGGATCACAACAAGTCCAGCTGCAGCCAATGACCCAGCTCCACCTGCATAGGGTGTGTTCCTCAAAGGCCC
AGCTTTCACAAATGGGCCCACCAGGAGAAACCCATGGGCCAAGCCCACCTCAATTCCCCTCAGAAGTGGGTTCACTGCGGTCCGGTATGCTGGGAGGTTG
GATAGGAGAGCTCTTGAGAGTGGGGAAGAAGTGAAGTTGGATTTGAGCATTGGTGAAGAAGTTGCTGAGGCCATGATTATGCCTTTTGCTCCTCTCACTT
ACACTTTCACTTACACAACCAAAAAAATAAATAAGAAAACTGTCCAAGTCTCAATGAGGAGTTGCAGAGACCCTAACA