Detailed information on CNT30644293


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021516Cannabis sativaCitrullus lanatus29.915.2295.8396forward
CNT30730658Cannabis sativaCorchorus capsularis30.2212.3692.7897forward
CNT30492881Cannabis sativaOlea europaea27.7313.889.8989forward
CNT30502643Cannabis sativaNicotiana attenuata27.16.7294.2587forward
CNT30163195Cannabis sativaPistacia vera23.6832.6286.8476reverse complement
CNT30543269Cannabis sativaBrassica napus22.122.491.5571forward
CNT30237740Cannabis sativaBrassica oleracea22.125.9291.5571reverse complement
CNT3082974Cannabis sativaBrassica juncea22.128.3591.5571reverse complement
CNT30356763Cannabis sativaLactuca sativa26.4815.6892.9485reverse complement
CNT30319059Cannabis sativaAsparagus officinalis31.1512.389100forward
CNT30723626Cannabis sativaLupinus angustifolius30.2216.7293.8197reverse complement

Expression of CNT30644293

Peptides detected in this lncRNA

>peptide 1 (41 aa)
FYFIFIYFNFFFIIFSSLFFFYFFFDFLLFHHSLSAIGLIL*

>peptide 2 (34 aa)
YSTSFLFTLTFFLLFFPLFSFFISFLIFFFSIIP*

Sequence

>CNT30644293
TATTCTACTTCATTTTTATTTACTTTAACTTTTTTTTTATTATTTTTTCCTCTCTTTTCTTTTTTTATTTCTTTTTTGATTTTCTTCTTTTCCATCATTC
CTTAAGTGCCATAGGTTTGATCCTGTAGAATCTTACTCATTTTCTCATTGAGCGAAAGGTACGAAATAAATCAGATTGATTTTTCGATCAAAAAAAGTAC
TACTCACCATTCATTAGATAGAGAAGATTACCAAGATTTCGTGATCCGCTGCCGACTTATTCCAATTCAATGAGCATTCTCAATATTCAATATTATTTAC
ACTTTTTTATGCTTTGATTGT