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Detailed information on CNT30643829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553919Cannabis sativaOryza glaberrima15.6623.4981.43140reverse complement
CNT30101726Cannabis sativaOryza rufipogon15.6624.5281.43140reverse complement
CNT30576293Cannabis sativaOryza barthii13.3122.882.35119reverse complement
CNT30332970Cannabis sativaCynara cardunculus14.6524.6282.44131forward

Expression of CNT30643829

Peptides detected in this lncRNA

>peptide 1 (59 aa)
ILKRYFFTVSIIQSPRPRLPRLLPQTTFLHYLEFPANYLQRVAETRVPRELEISLFSSL*

>peptide 2 (68 aa)
MTGISGFASLGPKTKNFVVAGGLTSFVFGVYFYTMRAVGGTDELQVAIDKFEDQKNKKEAEPNLPSKA*

Sequence

>CNT30643829
AAATCCTTAAACGTTATTTCTTCACTGTCTCGATAATTCAAAGCCCCAGACCCCGACTCCCTCGTCTCCTTCCTCAAACGACATTTCTTCACTATCTCGA
ATTTCCAGCAAACTACTTGCAACGAGTTGCAGAGACAAGGGTTCCTAGAGAACTAGAGATATCTCTCTTTTCCTCCCTCTAATTCTCTTCTCCAGAGTGG
AGCCAGCCGTGATTAGTGGTTCTTCGCTCTTTTTCTGGTCTCGCTCCTCTTCACACCGACCTCTTCAACATTGCTTCTTCAGTCTAACTCGATCGCTTTC
TCACTAAACCTTAGAAATATTATCAACAACCTGATCGCTGATCGGACATCGGAGCGGAGGCGTTTCACTCTCAGGCTTACAGTCTGTCAAAATCGCAAGA
GCTGCAGTTACTTTGGCCACAGGACTGTTGAAGAAGGCAGGGGCTGAGGCTACTCTATAGTTTACTTAATCACAAGAAGCTTGATGACTGGAATTTCAGG
ATTCGCGAGCCTTGGACCTAAGACCAAGAACTTTGTAGTTGCCGGTGGATTGACATCATTCGTCTTTGGGGTATATTTCTACACAATGAGGGCTGTGGGA
GGTACAGATGAGCTGCAAGTGGCCATAGATAAGTTTGAGGATCAGAAGAACAAGAAAGAGGCTGAACCAAATTTGCCATCAAAAGCTTAATAACATGTTT
AATTGTACTTCGTTTGTTGTCTAAAACGGAAATAAGATTTTTCTCGATACTCTTTCTTTACAATAAGCTTTTTTTGCTGGCGTAATATGTAATATTTCTT
CATTAAATGTCTAACACTACAGAAATTTTGTTCACTTACATGCCAAGCACATATTATTTTTAACCTTGAACGTTGGTAAAGAGAGATTTCAAAG