CANTATAdb - search

Detailed information on CNT30643392

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 4e-109

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-77

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30233494	Cannabis sativa	Brassica oleracea	67.86	65.06	85.84	473	forward

Expression of CNT30643392

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GKNGSFNINWSHWTKLKSKNFKTENKEHFVQQKD*

>peptide 2 (45 aa)
MVSEDSTSRVIVFPVKVLTKICIPPRSLSTKWRWIPSECCNRRGFV

>peptide 3 (61 aa)
MRRCWSGGMPSLSWILALTLSIVSELSTSKVMVLPVRVLTKICIPPRSLSTKWRVDSFWML*

Sequence

>CNT30643392
GGCAAGAACGGGAGTTTTAACATTAACTGGTCTCACTGGACCAAATTAAAAAGTAAGAACTTTAAAACTGAAAATAAAGAACACTTTGTTCAGCAAAAGG
ATTAATAACAAGCCCATCAAAAGACACCACACCGAAAAGCAGAGACCGAACCTCCACTACTTCAGAAATCCCCACCACGAAGACGAAGAACAAGGTGGAG
GGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGACCATCCTCCAATTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCC
TTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTAACAAAGATCTGCATAC
CACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGTCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAG
TCTCTGCTGGTCCGGGGGGATCCCTTCTTTGTCCTGGATCTTTGCTTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCGAGGGTGATCGTCTTTCCA
GTCAAAGTCTTAACGAAGATCTGCATACCACCACGGAGCCTGAGCACCAAGTGGAGGTGGATTCCTTCTGAATGTTGTAATCGGCGAGGGTTCGTCC